Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6 183 5e-44 seq111 178 2e-42 seq261 125 1e-26 seq28 104 4e-20 >seq6 Length=2418782 Score = 183 bits (202), Expect = 5e-44 Identities = 182/228 (80%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| || ||||| |||||||| | ||||||||| ||| | Sbjct 845991 GTACAAAGGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGGATT-C 846048 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| ||||||| | |||| | | |||||| | || Sbjct 846049 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCGAGCACGGAGGATTTTCAACGGGTT 846108 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||| | | || |||| | |||||| | | ||||||||||||||||| Sbjct 846109 ACCAATGCCTTTCGACAATGGACATAG-CACGTTGATTCCTCCAGTGTAGCGCGCGTGCA 846167 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 846168 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 846213 >seq111 Length=204346 Score = 178 bits (196), Expect = 2e-42 Identities = 181/228 (79%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| || ||||| |||||||| | ||||||||| ||| | Sbjct 236 GTACAAAGGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGGATT-C 179 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| ||||||| | |||| | | |||||| | || Sbjct 178 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCGAGCACGGAGGATTTTCAACGGGTT 119 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||| | | || |||| | |||||| | | |||||||||||||||| Sbjct 118 ACCAATGCCTTTCGACAATGGACATAG-CACGTTGATTCCTCCAGTGTAGCGCGCGTGTA 60 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 59 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 14 >seq261 Length=63125 Score = 125 bits (138), Expect = 1e-26 Identities = 161/218 (74%), Gaps = 18/218 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| ||||||| ||| || ||||| |||||||| | ||| | || Sbjct 62277 GTACAAAGGGCATGGACGTAATCAGCGTGAGCT-GATGACTCACACTTGATC--AA---- 62225 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 | || || ||||||||| ||||||| | || || | | |||||| || | Sbjct 62224 -------AGGA--AATAATTGCAATTCCCTATCCCGAGCATGAAGGATTTTCAACAGGTC 62174 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| ||| | | ||| |||| | |||||| | | ||||||||||||||||| Sbjct 62173 ACCAGTGCCTTTCGACAATGGTCATAG-CACGTTGATTCCTCCAGTGTAGCGCGCGTGCA 62115 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||||||||||||||||||||||||||||||| Sbjct 62114 GCCTCGGACATCTAAGGGCATCACAGACCTGTTATTGC 62077 >seq28 Length=813050 Score = 104 bits (114), Expect = 4e-20 Identities = 110/140 (79%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 89 CTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGA 147 ||||||| | |||| | | |||||| | ||||| ||| ||| | | || |||| Sbjct 193776 CTATCCCGAGCACGGAGGATTTTCAACGGGTTACCAATGCCTTTCGACAATGGACATAG- 193834 Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 | |||||| | | ||||||||||||||||| |||| | ||||||||||||||||||||| Sbjct 193835 CACGTTGATTCCTCCAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGAC 193894 Query 208 CTGTTATTGCCTCAAACTTC 227 ||||||||| ||| |||||| Sbjct 193895 CTGTTATTG-CTC-AACTTC 193912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990165250