Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dracunculus_20medinensis_20[genbank_20GCA_5F000946415.1_202014-11- 13] 1,350 sequences; 103,750,844 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq197 347 2e-93 seq52 347 2e-93 seq89 327 2e-87 seq58 122 1e-25 seq54 111 3e-22 seq418 96.9 6e-18 seq91 93.3 7e-17 seq5 73.4 7e-11 >seq197 Length=101607 Score = 347 bits (384), Expect = 2e-93 Identities = 255/294 (87%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | || ||| ||||||||||||||||||||||||| Sbjct 560 TACTAAGCAGGATTACTATCGCAACTACATATCA-CAGTAGGGTAAAACTAACCTGTCTC 618 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 619 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 678 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 738 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 739 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 798 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | |||||||||||||||||| ||||| ||| ||||||| Sbjct 799 AGAGATTTTCTAATTCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 852 >seq52 Length=376480 Score = 347 bits (384), Expect = 2e-93 Identities = 255/294 (87%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | || ||| ||||||||||||||||||||||||| Sbjct 374853 TACTAAGCAGGATTACTATCGCAACAACATATCA-CAGTAGGGTAAAACTAACCTGTCTC 374911 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 374912 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 374971 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374972 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 375031 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 375032 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 375091 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | |||||||||||||||||| ||||| ||| ||||||| Sbjct 375092 AGAGATTTTCTAATTCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 375145 >seq89 Length=237237 Score = 327 bits (362), Expect = 2e-87 Identities = 251/294 (85%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | || ||| ||||||||||||||||||||||||| Sbjct 233471 TACTAAGCAGGATTACTATCGCAACAACATATCA-CAGTAGGGTAAAACTAACCTGTCTC 233529 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 233530 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 233589 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| Sbjct 233590 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCAA---ATCAAAAAGCAACGTCGCTA 233646 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 233647 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 233706 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | |||||||||||||||||| ||||| ||| ||||||| Sbjct 233707 AGAGATTTTCTAATTCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 233760 >seq58 Length=351448 Score = 122 bits (134), Expect = 1e-25 Identities = 135/179 (75%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| ||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| Sbjct 345622 ATTTTGCTTGACAATGATAGGAAGAACCGACATCGAAGGACCAGAAAGCAATGTCGTTAT 345681 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 | | ||| |||| ||||| |||||||| ||| ||||||||||||| |||||| | || Sbjct 345682 AAGCACTTAGCTGTCACAATCCAGTTATTGCTGAGGTAACTTTTCTGATACCTCTTG-CT 345740 Query 241 CAA------ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||||| ||||||||||| ||| ||| ||||| || ||||||| Sbjct 345741 AAATTAGAGATTTCCTAACTCTAAAGGATCGGGAGGTCACGCTTTCGCTGTCTGTATTC 345799 >seq54 Length=361334 Score = 111 bits (122), Expect = 3e-22 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||||||||| || |||| |||| ||| ||||||||||||||| ||||| | Sbjct 10790 CAGTAGGGTAAAACTAACTTGCCTCACAACGGCCTAGACCCAGCTCACGTTCTCTATTGG 10849 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||| |||||||||||| | |||||||||||| ||||||||||| Sbjct 10850 TGGATGAACAATCCAA--TCTGGTGAATTCTGCTTCACAATGATAGGAAG 10897 Score = 78.8 bits (86), Expect = 2e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 10897 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 10939 >seq418 Length=16840 Score = 96.9 bits (106), Expect = 6e-18 Identities = 136/190 (72%), Gaps = 21/190 (11%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACG--GTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || |||| ||| |||| ||| || ||||||| ||||||||||||||||| Sbjct 1511 ATCAGTGGGATAAAGCTAGCCTGCCTCTAAACCCAGTCTAAATCCAGCTCACGTTCCCTA 1570 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA------TGATAGGAAG 144 || |||||||| ||| ||| |||||||||| | | |||||||||| Sbjct 1571 TT-------GAACAATCAAACACTTGGTGAATTCTGCTGCACAACTCCTCTGATAGGAAG 1623 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||| ||||| ||| ||| |||| | || ||||||| || ||| ||| ||| | | Sbjct 1624 AGCTGACATGGAAAGATGAAAAGGTAATATCGCTATAAA----TGG--TCCAGAAGTCGG 1677 Query 205 TTATCCCTGT 214 || ||||||| Sbjct 1678 TTCTCCCTGT 1687 >seq91 Length=235776 Score = 93.3 bits (102), Expect = 7e-17 Identities = 87/110 (79%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 ||||||||||||||| | |||| |||| ||| ||||||||||||||| ||||| | Sbjct 234829 CAGTAGGGTAAAACT-----GCCTCACAACGGCCTAGACCCAGCTCACGTTCTCTATTGG 234883 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 ||| |||||||||||| | |||||||||||| ||||||||||| Sbjct 234884 TGGATGAACAATCCAA--TCTGGTGAATTCTGCTTCACAATGATAGGAAG 234931 Score = 78.8 bits (86), Expect = 2e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 234931 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 234973 >seq5 Length=2717535 Score = 73.4 bits (80), Expect = 7e-11 Identities = 91/123 (74%), Gaps = 10/123 (8%) Strand=Plus/Minus Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||| ||||| ||| | || |||| || ||||| |||||| || |||||||| | Sbjct 1397695 TATTGGTGGGGGAATA-TCGAACGTTTGGCGAATCTCGCTTCGCAAT-ATAGGAAGGACG 1397638 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 | |||||||||| ||||||||| |||||||| |||| ||||||||| |||| Sbjct 1397637 GGCATCGAAGGACCAAAAAGCAGTGTCGCTATAGACGC--------CACAAGCCAATTAT 1397586 Query 209 CCC 211 ||| Sbjct 1397585 CCC 1397583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854388465600