Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq20 168 1e-39 seq13 95.1 2e-17 >seq20 Length=790326 Score = 168 bits (186), Expect = 1e-39 Identities = 176/223 (79%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| | Sbjct 268858 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 268915 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 268916 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 268975 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 268976 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 269033 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 269034 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 269075 >seq13 Length=936042 Score = 95.1 bits (104), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 73 CAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGT 131 ||| |||||||||| | ||| | |||||| || ||||| | ||||| ||| | Sbjct 229257 CAATAATTGCAATGTCCGATCYCAATCACGGCAAATTTTCACCGGGTTACCAACCCCTTT 229198 Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 ||| |||| | || | || | | | ||||||||||||||||| |||| | ||||| Sbjct 229197 CGGGGAAGGACA-AG-CACGCTRATTTTGCCAGTGTAGCGCGCGTGCAGCCCCGGACATC 229140 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||||||||||||||||||||||| ||||| Sbjct 229139 TAAGGGCATCACAGACCTGTTATTG-CTCAA 229110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983637890