Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq153 158 3e-36 seq855 78.8 2e-12 >seq153 Length=171603 Score = 158 bits (174), Expect = 3e-36 Identities = 120/142 (85%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||||| ||||||||||| | || ||||||||||| || ||||| | ||||| | || Sbjct 22833 ACCCGGTATCTTCACCGGTACTAAGATTTCACCGAGCTTACAGTTGATAGAGTGCACGAA 22892 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 || ||||||||||| |||||||| ||||||| | ||||||||||||||||||||| |||| Sbjct 22893 TCATTACGCCTTTCATGCGGGTCAGAACTTAACTGACAAGGAATTTCGCTACCTTTGGAC 22952 Query 122 CGTTATAGTTACGGCCGCCGTT 143 |||| |||||||| ||||||| Sbjct 22953 CGTTTTAGTTACGAACGCCGTT 22974 >seq855 Length=6882 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 74 TCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 133 ||||||| ||||| | ||| ||||| ||| |||| ||||||||| || || |||||||| Sbjct 1153 TCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 1094 Query 134 GGCCGCCGTTTACTGGGGCTTAA 156 ||||||||||| | |||||| Sbjct 1093 TCCCGCCGTTTACCCGCGCTTAA 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062376138496