Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq20 221 2e-55 seq13 214 3e-53 >seq20 Length=790326 Score = 221 bits (244), Expect = 2e-55 Identities = 201/249 (81%), Gaps = 16/249 (6%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 269016 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 269074 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG------CCAGCCACCAACCAT 130 | ||| ||||| | || | | ||||||||||||| ||| || || | || Sbjct 269075 AT-TTCGTGCGGCTGAACACCGAAAATCCCTCTAAGAAGTTGTGCCCA--CAGCAGCAAT 269131 Query 131 -AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || | | |||||||| ||| || |||||| ||||||||||||| |||||||||| Sbjct 269132 GAGCCAA-----CTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAA 269186 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||| ||||||||||||||||||||||||| ||| |||||| |||| |||||| Sbjct 269187 ATCGCTCCACGAACTAAGAACGGCCATGCACCACCATCCACCGAATCATGAAAAAGCTAT 269246 Query 250 CAATCTGTC 258 ||||||||| Sbjct 269247 CAATCTGTC 269255 >seq13 Length=936042 Score = 214 bits (236), Expect = 3e-53 Identities = 200/249 (80%), Gaps = 18/249 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 229169 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 229111 Query 77 AACTTCCATT-GGCTGGAAGCCAATAGTCCCTCTAAGAAG------CCAGCCACCAACCA 129 | || ||| ||||| | || | | | ||||||||||| ||| || || | | Sbjct 229110 A--TTTCATGCGGCTGAACACCGAAAATTCCTCTAAGAAGTTGTGCCCA--CAGCAGCAA 229055 Query 130 T-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | || | | |||||||| ||| || ||| || ||||||||||||| ||||||||| Sbjct 229054 TTAGCCAA-----CTATTTAGTAGGCTAGAGTCCCGCTCGTTATCGGAATAAACCAGACA 229000 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||| ||||||||||||||||||||||||| ||| |||||| |||| ||||| Sbjct 228999 AATCGCTCCACGAACTAAGAACGGCCATGCACCACCATCCACCGAATCATGAAAAAGCTA 228940 Query 249 TCAATCTGT 257 ||||||||| Sbjct 228939 TCAATCTGT 228931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796782663126