Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq855 208 1e-51 seq141 109 9e-22 >seq855 Length=6882 Score = 208 bits (230), Expect = 1e-51 Identities = 153/177 (86%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 6880 CGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGC 6821 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 6820 TATGGACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 6761 Query 238 CCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| ||| | | |||||||||||| ||||| ||||| ||| |||||| Sbjct 6760 CTGGAAACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGTATTC 6704 >seq141 Length=204012 Score = 109 bits (120), Expect = 9e-22 Identities = 92/112 (82%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 1 ACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGGA 60 Query 243 AA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||| | | |||||||||||| ||||| ||||| ||| |||||| Sbjct 61 AACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGTATTC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854380810176