Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq855 372 1e-100 seq141 111 5e-22 seq312 109 2e-21 >seq855 Length=6882 Score = 372 bits (412), Expect = 1e-100 Identities = 331/409 (81%), Gaps = 14/409 (3%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 6669 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACGC 6610 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | ||| ||| Sbjct 6609 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGGTCG 6550 Query 128 GC------CCGCGAAGGACC---TTAACGCCAGAAAATGGT--CGGTGAAGAC-CAGTTC 175 | ||| | | ||| ||||| ||| |||| | | || | | || | | Sbjct 6549 CCGGGCCACCGGGTGGCACCGACTTAACACCA-AAAAGGACACCCTTGCGGGCGCACTCC 6491 Query 176 CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 || || | |||||||||| || |||| | |||||||||||||||| ||||| || Sbjct 6490 CGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGGCGCCTTG-CG 6432 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| Sbjct 6431 GCTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAGTCAAGCTCA 6372 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 6371 ACAGGGTCTTCTTTCCCCGCTAAATTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 6312 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 ||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 6311 GATAGTAGATAGGGACAGTGGGAATCTCGTTGATCCATTCGTGCGCGTC 6263 Score = 152 bits (168), Expect = 2e-34 Identities = 110/127 (87%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 || |||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1153 TCGTGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 1094 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 ||||||||||||||||||||| | | |||| | || ||||||||||||||||||| Sbjct 1093 TCCCGCCGTTTACCCGCGCTTAATCAAGTTTCCTTGGCTTAACATTCAGAGCACTGGGCA 1034 Query 514 GAAATCA 520 ||||||| Sbjct 1033 GAAATCA 1027 >seq141 Length=204012 Score = 111 bits (122), Expect = 5e-22 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 147 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACGC 206 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 ||| |||||||| ||||||||| |||||||||| ||||||| Sbjct 207 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACA 247 >seq312 Length=75669 Score = 109 bits (120), Expect = 2e-21 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 170 TGCGCGTCGGTAGTTAGCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 111 Query 457 CGCCGTTTACCCGCG 471 ||| ||||||||||| Sbjct 110 CGCTGTTTACCCGCG 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635163273408