Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq13 331 3e-88 >seq13 Length=936042 Score = 331 bits (366), Expect = 3e-88 Identities = 383/510 (75%), Gaps = 16/510 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || ||||| | || || ||||| | |||||||||| Sbjct 228213 GTACCCATTCCGATGACCGGCCTCATAAGAGATCGGTCTCGTTATTTCTCGTCACTACCT 228154 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | ||| | || |||||||||||||||||||||||| ||||| || || || ||| || Sbjct 228153 CCTCATGTTGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 228094 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| || |||||||| ||||||||| || | ||||||||||| ||||||||| Sbjct 228093 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTCATCACCATGGTA 228034 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||||||||||| |||||| | ||||| || | ||||||| Sbjct 228033 GTCAGGTACACTACCATCGAAAGTTGATAAGGCAGACACTTGAAAGACACGTCGCCGGTA 227974 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGG 299 |||| || |||||| | | |||| || ||| ||| || ||| |||||||| |||| Sbjct 227973 CAAGACCGTGCGATCAGCTTAGTTGTTCTGAGTCAACACTGGACGCCCGAAGGCGCTTGG 227914 Query 300 TTTTTTATCTAATAAATACACCCC---TTCCGAAG--TCGGGGTTTTTAGCATGTATTAG 354 |||| | | || |||| | | || | |||| | | | ||| ||||||||||| Sbjct 227913 TTTTGTGGCGAACAAATGCGCTCCGCTCTGGGAAGATTGGAGCTTTGGTGCATGTATTAG 227854 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 ||||||||||||||| |||||||| ||||||| |||| |||| ||| ||| | Sbjct 227853 CTCTAGAATTACCACAGTTATCCA---AGTAAGG-----TCAAGTAAATTATAGCTGGTG 227802 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||| | | ||||||||||| |||| | | ||||| ||||| |||||||| |||||| Sbjct 227801 TAATGCG-CGTTCGCAGTTTCCCTGTCT-GGCAGCTTACACTTATACATGCATAGCTTAA 227744 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| | | || || | | | ||||| Sbjct 227743 TCTTTGAAATGAACACATCAGTTCAGGCAG 227714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366076416