Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq38 91.5 1e-13 >seq4 Length=1352950 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66004 AAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAAT 66063 ||| |||| || || | |||||| ||||| |||| || || | | ||| || | || Sbjct 596804 AAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGAT 596863 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 ||||||||||| ||| ||| |||||||||||| || || ||||| ||| ||||| Sbjct 596864 TTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATT 596923 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 ||| || ||||| ||| ||||||||| ||||||||||| Sbjct 596924 GCACGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTC 596962 >seq38 Length=464492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGAT 61492 ||| || |||||||| |||| |||| | | ||| | ||| || |||| |||| || Sbjct 130822 GAAGGCTGATTGGGCACTTCG-TTGGGTTGCGAGTTCGGAGGCGACCTTTGCTGAAAGAC 130764 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 | | || ||||| | || ||||| | || ||| ||| ||||||||||| || | Sbjct 130763 TCGTTGCGTTTGCTGCAGTTGAGGGCATTTTCTTCTCAGGAAGTTTTGCCGCAATTTTCT 130704 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || | || |||||||||||| |||| || || || |||||||||| |||| || || | Sbjct 130703 GGCTAAAAAAACGTGGACTTCTGCCTGGCCTAACACACAGCAATGAGCTGATTTCTCGTG 130644 Query 61613 ACGA 61616 |||| Sbjct 130643 ACGA 130640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557117321440