Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq949 120 3e-25 seq2677 102 9e-20 seq2682 96.9 4e-18 >seq949 Length=6172 Score = 120 bits (132), Expect = 3e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||| Sbjct 2810 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTATGCAATCGGAC 2869 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| | ||||| ||| | || || | || |||| ||| || ||||| || Sbjct 2870 CTCGTTAGTTCAACTTAACTGTAACTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 2929 Query 121 TCTCGGGCACG-GACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATT 179 |||| ||| || ||||||| ||||| ||||||| || | || | | | ||||| Sbjct 2930 TCTC-GGCGCGTGACCTTAGCACCCCGCGCCTCACT-GCCGTGTAT-ATTAAATAGCATT 2986 Query 180 CGGAGTTTGGCAGGACTTG 198 ||||||||| | ||| ||| Sbjct 2987 CGGAGTTTGTCTGGATTTG 3005 >seq2677 Length=1202 Score = 102 bits (112), Expect = 9e-20 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| |||||| |||||||||| || |||||||| |||||| | ||| || Sbjct 1104 GCACTCTTTAAATGAATTGCTGCTTCCAAGCAAACATCCTGGCTGTCTAAGCAACTGAAC 1045 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | |||| | ||||| | |||| || | || ||| ||| || ||||| || Sbjct 1044 CGCCTTAGTTCAACTTAGTGTAGATTTTGGGACCTTAGCTGCAGGTCTGGGTTCTTTCCC 985 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180 |||||| ||||||||||| |||||||||||||| | || | || | | || ||||| Sbjct 984 TCTCGGACACGGACCTTAGCACCCATGCCCTCA-TTGCAGAGTAT-ATTTATTACCATTC 927 Query 181 GGAGTTTGGCAGGACTTG 198 |||||| ||||| ||| Sbjct 926 GGAGTTCATCAGGATTTG 909 >seq2682 Length=265177 Score = 96.9 bits (106), Expect = 4e-18 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| |||||| ||| || |||||||||| || |||||||| |||||| || || ||| Sbjct 14354 GCACTCTTTAAATGTATAGCTGCTTCCAAGCTAACATCCTGGCTGTCTCTGCAGTCGGAC 14413 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 | |||| | ||||| | | |||| || | || |||| || || || ||| || Sbjct 14414 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 14473 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179 |||||| | |||||||| ||||| ||||||||| || | || | |||| | ||| Sbjct 14474 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 14530 Query 180 CGGAGTTTGGCAGGACTTG 198 ||||||||| ||| | ||| Sbjct 14531 CGGAGTTTGTCAGAATTTG 14549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537564205416