Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000026.1
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
seq949 120 3e-25
seq2677 102 9e-20
seq2682 96.9 4e-18
>seq949
Length=6172
Score = 120 bits (132), Expect = 3e-25
Identities = 149/199 (75%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||||||||||||||||| |||||||||||| |||||| ||||| |||
Sbjct 2810 GCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTATGCAATCGGAC 2869
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
||||||| | ||||| ||| | || || | || |||| ||| || ||||| ||
Sbjct 2870 CTCGTTAGTTCAACTTAACTGTAACTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCC 2929
Query 121 TCTCGGGCACG-GACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATT 179
|||| ||| || ||||||| ||||| ||||||| || | || | | | |||||
Sbjct 2930 TCTC-GGCGCGTGACCTTAGCACCCCGCGCCTCACT-GCCGTGTAT-ATTAAATAGCATT 2986
Query 180 CGGAGTTTGGCAGGACTTG 198
||||||||| | ||| |||
Sbjct 2987 CGGAGTTTGTCTGGATTTG 3005
>seq2677
Length=1202
Score = 102 bits (112), Expect = 9e-20
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| |||||| |||||||||| || |||||||| |||||| | ||| ||
Sbjct 1104 GCACTCTTTAAATGAATTGCTGCTTCCAAGCAAACATCCTGGCTGTCTAAGCAACTGAAC 1045
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
| |||| | ||||| | |||| || | || ||| ||| || ||||| ||
Sbjct 1044 CGCCTTAGTTCAACTTAGTGTAGATTTTGGGACCTTAGCTGCAGGTCTGGGTTCTTTCCC 985
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGCATTC 180
|||||| ||||||||||| |||||||||||||| | || | || | | || |||||
Sbjct 984 TCTCGGACACGGACCTTAGCACCCATGCCCTCA-TTGCAGAGTAT-ATTTATTACCATTC 927
Query 181 GGAGTTTGGCAGGACTTG 198
|||||| ||||| |||
Sbjct 926 GGAGTTCATCAGGATTTG 909
>seq2682
Length=265177
Score = 96.9 bits (106), Expect = 4e-18
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60
||| |||||| ||| || |||||||||| || |||||||| |||||| || || |||
Sbjct 14354 GCACTCTTTAAATGTATAGCTGCTTCCAAGCTAACATCCTGGCTGTCTCTGCAGTCGGAC 14413
Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120
| |||| | ||||| | | |||| || | || |||| || || || ||| ||
Sbjct 14414 CCCCTTAGTTCAACTTAGCATATATTTTGGGACCTTAGCTGATGCTCTGGGTTGTTCCCC 14473
Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGCGC-ATT 179
|||||| | |||||||| ||||| ||||||||| || | || | |||| | |||
Sbjct 14474 TCTCGGACTGGGACCTTAGCACCCCAGCCCTCACTGCCGTGT-ATATC--ATGCCCCATT 14530
Query 180 CGGAGTTTGGCAGGACTTG 198
||||||||| ||| | |||
Sbjct 14531 CGGAGTTTGTCAGAATTTG 14549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537564205416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |