Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq949 125 1e-26 >seq949 Length=6172 Score = 125 bits (138), Expect = 1e-26 Identities = 220/310 (71%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77 ||||||| |||||| || ||||| ||||| ||||||| | |||||||| | | Sbjct 2321 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCA-ACGCCCCCGAAGGTT-TGC 2378 Query 78 CATACTGTCAATCTCGACTCTTTCCGT-GGATTTGCCTGC-GGAAATCAACGTCTACACT 135 |||| ||| || | ||| |||||||||| | || | || ||||| Sbjct 2379 TGTACTATCAGCCTTTAGCAAGACCGGCGGATTTGCCTACCGGTCCTATAC--CTACAGC 2436 Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195 ||||||| |||||||||||| ||||| ||||||| || ||||||||| || | | Sbjct 2437 CTTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAGT 2496 Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACC 254 | | |||| | |||| ||| | || | |||||| | || || ||||| | || Sbjct 2497 TATAAAAAGTACGGAAATATTAATCCGTTGT-CCATCGAATATC-CCTTTCGGGTTCTCC 2554 Query 255 TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314 ||| | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| | Sbjct 2555 TTAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTG 2614 Query 315 AGGGGGTTTC 324 | |||||| Sbjct 2615 GGCAGGTTTC 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959934019200