Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000056.1
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
seq949 125 1e-26
>seq949
Length=6172
Score = 125 bits (138), Expect = 1e-26
Identities = 220/310 (71%), Gaps = 9/310 (3%)
Strand=Plus/Plus
Query 18 TTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACGTTC 77
||||||| |||||| || ||||| ||||| ||||||| | |||||||| | |
Sbjct 2321 TTAGCGGTTTTTCTTGGAAGTCTGATTACCTGCACTATCA-ACGCCCCCGAAGGTT-TGC 2378
Query 78 CATACTGTCAATCTCGACTCTTTCCGT-GGATTTGCCTGC-GGAAATCAACGTCTACACT 135
|||| ||| || | ||| |||||||||| | || | || |||||
Sbjct 2379 TGTACTATCAGCCTTTAGCAAGACCGGCGGATTTGCCTACCGGTCCTATAC--CTACAGC 2436
Query 136 CTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGTCACCCT 195
||||||| |||||||||||| ||||| ||||||| || ||||||||| || | |
Sbjct 2437 CTTTAACGATCTATTCCGTCAGATCGCGGCAGTGTCACTACTCCGTCCCCACATCGCAGT 2496
Query 196 CAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGG-TCTCGCCGTTCGGCTGAACC 254
| | |||| | |||| ||| | || | |||||| | || || ||||| | ||
Sbjct 2497 TATAAAAAGTACGGAAATATTAATCCGTTGT-CCATCGAATATC-CCTTTCGGGTTCTCC 2554
Query 255 TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCG 314
||| | ||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 2555 TTAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTTATCCTTTCGGTG 2614
Query 315 AGGGGGTTTC 324
| ||||||
Sbjct 2615 GGCAGGTTTC 2624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 959934019200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |