Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq949 340 3e-91 seq2677 334 1e-89 seq2682 329 6e-88 seq1010 176 9e-42 seq2403 170 4e-40 seq1316 163 6e-38 seq1489 113 9e-23 seq962 113 9e-23 >seq949 Length=6172 Score = 340 bits (376), Expect = 3e-91 Identities = 276/333 (83%), Gaps = 1/333 (0%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| |||||| |||||||||| |||||| | | | || |||||||||||||||| Sbjct 3423 CCCGAACAGGGGAGTGAAATAGAACCTGAAACTGTGTGCTTACAAGCGGTCGGAGCGTCC 3364 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | | |||||||||||||||||||||||||||||||||||||| || || | || || Sbjct 3363 AGGTGGCGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTCTCTGGCAAG 3304 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| | ||||| | || | |||||| ||||||||| || || |||||| ||| Sbjct 3303 GTTAAGTGTTTCAGACACGG-ATCCGAAGCGAAAGCGAGTCTGAATAGGGCGTATAGTCA 3245 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | || | ||||||||||||||||||||||||||| | |||||||||| |||||||| | Sbjct 3244 GGGGAGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGGTTGAAGGTGCGGTAACAC 3185 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 || ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||| Sbjct 3184 GTACTGGAGGACCGAACCGATAAACGTTGAAAAGTTTCCGGATGATCTGTGGGTAGGGGT 3125 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||| ||||||||||||||||||||||||| Sbjct 3124 GAAAGGCTAATCAAACTGGGAAATAGCTCGTAC 3092 >seq2677 Length=1202 Score = 334 bits (370), Expect = 1e-89 Identities = 271/324 (84%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 14 GGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTG 73 ||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||| |||| Sbjct 501 GGGGTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCCAAGTGATTTGGTG 560 Query 74 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG-C 132 ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| | | Sbjct 561 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACT-GTCACTGGCAAGGTTAAGCGAC 619 Query 133 TTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTA 192 | || || ||||| || ||||||||| || || |||||| ||| |||| || Sbjct 620 TAAAGTTGCGC-AGCCGGAGCGAAAGCGAGTCTGAATAGGGCGCATAGTCAGTGGGAGTA 678 Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252 |||||||||| ||||||||||||| | |||| |||||| ||||||| || ||||||| Sbjct 679 GACGCGAAACTTTGTGATCTACCCTTGGTCAGGATGAAGTTCCGGTAACACGGGATGGAG 738 Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312 | |||||| ||||||||||||||||||| |||||| | ||||||||||||||||| | Sbjct 739 GTCCGAACTAGTAAACGTTGAAAAGTTTTTGGATGAACTGAGGGTAGGGGTGAAAGGCTA 798 Query 313 ATCAAACTGGGAAATAGCTCGTAC 336 ||||||||| |||||||||||||| Sbjct 799 ATCAAACTGAGAAATAGCTCGTAC 822 >seq2682 Length=265177 Score = 329 bits (364), Expect = 6e-88 Identities = 276/332 (83%), Gaps = 11/332 (3%) Strand=Plus/Minus Query 7 GAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA 66 ||||| ||||||||||||| | |||| || |||| ||||||||||||||||| Sbjct 14958 GAGCAACGGGGTGAAATAGAACTTGAAACCATGCGCTTACAAGCGGTCGGAGCC------ 14905 Query 67 TTCGG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125 ||||| ||||||||||||||||||||||||||||||||||||| || || || |||| Sbjct 14904 TTCGGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACG-GTTACTGGCAAGGT 14846 Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185 ||| | | || | | |||||||| ||||||||| || || ||||||| ||| || Sbjct 14845 TAATGTTTGAAGAACAGG-AGCCGAAGCGAAAGCGAGTCTGAATAGGGCGATTAGTCAGT 14787 Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC-GGTAACGCG 244 ||| |||||||||||| ||||||||||||| || |||||||||| ||| |||||| | Sbjct 14786 GGCCGTAGACGCGAAACTTTGTGATCTACCCTTGACCAGGTTGAAG-CGCTGGTAACACA 14728 Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304 | ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 14727 TCGTGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGAGTTGAGGGTAGGGGTG 14668 Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||||| |||||||||||||| Sbjct 14667 AAAGGCCAATCAAACTGAGAAATAGCTCGTAC 14636 >seq1010 Length=5412 Score = 176 bits (194), Expect = 9e-42 Identities = 200/265 (75%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| ||| ||||||| || ||| ||| ||| ||| | | || ||| || ||||| Sbjct 1760 GGTGACATCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGAGCAAGCTTAAG 1702 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | |||| || || || ||||||||| || || |||||| | |||| || | Sbjct 1701 CCGAT-AGGCG---TATGCGCAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTGTA 1646 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| |||||||| |||||||| ||| ||||||||||||| | |||||| | || Sbjct 1645 TTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCACTG 1586 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||| ||| |||||||| || ||||||| | || ||||||||||||| Sbjct 1585 GAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCGATGACTTGTGGTTAGGGGTGAAAGG 1526 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| || Sbjct 1525 CCAATCAAACTGGGAAATAGCTGGT 1501 >seq2403 Length=69003 Score = 170 bits (188), Expect = 4e-40 Identities = 240/325 (74%), Gaps = 19/325 (6%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| | |||||||| | ||||||||| Sbjct 7223 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTCGGAGCC 7281 Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 | ||||||||||||||||||| | ||||||||| ||||||||| | || Sbjct 7282 TTTAGG---GGTGACGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGCTACGTGGC 7338 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GA 179 |||||||| | | || | |||||| || ||||||||| || || |||||| || Sbjct 7339 GAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTGA 7394 Query 180 GTTG-GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG- 237 || | |||| |||||| |||| | ||||||||| ||| | |||| ||||| ||||| Sbjct 7395 GTCGCGTGGT-CTAGACCCGAAGCGGTGTGATCTAGCCATGGCCAGGGTGAAG-CGCGGG 7452 Query 238 TAA---CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCG 294 ||| |||||| |||| ||||||| | |||||||| | |||||| | | Sbjct 7453 TAAGACCGCGTG---GAGGCCCGAACCCACCAGGGTTGAAAACCTGGGGGATGAGCTGTG 7509 Query 295 GGTAGGGGTGAAAGGCCAATCAAAC 319 | ||||||||||||||||||||||| Sbjct 7510 GTTAGGGGTGAAAGGCCAATCAAAC 7534 Score = 150 bits (166), Expect = 3e-34 Identities = 239/342 (70%), Gaps = 22/342 (6%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC---------CG 61 || || ||||||||| |||||| ||| | |||||||||| || ||||| | Sbjct 4996 AGCGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAAGCCGTGGGAGCGTCGGACGTCA 5055 Query 62 AG--TGATTCG------GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGT 113 || || || | ||||| |||||||||||| | ||||||||| |||||| | || Sbjct 5056 AGCTTGCTTGGCGTCTCGTGACTGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTTGCGGT 5115 Query 114 CACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGG 173 |||||||||| | || | |||||| || ||||||||| | ||||||| Sbjct 5116 GTGTTGCGAGGTTAACC----CGGGTGGGGTAGCCGTAGCGAAAGCGAGTCCGAACAGGG 5171 Query 174 CGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGT 232 || ||| | || | |||| |||| | |||||||| ||| | ||||||||||| Sbjct 5172 CGTTTCAGTAGCACGCTCAAGACCCGAAGCGGAGTGATCTAGCCATGGGCAGGTTGAAGC 5231 Query 233 CGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCG 292 | ||||| | | |||||||||||||| | |||||||| | ||||||| | Sbjct 5232 GGAGGTAAGACTTCGTGGAGGACCGAACCCACCAGGGTTGAAAACCTGGGGGATGACCTG 5291 Query 293 CGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 || |||||||||||||||||||||||| | |||||| || Sbjct 5292 TGGTTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGT 5333 >seq1316 Length=3583 Score = 163 bits (180), Expect = 6e-38 Identities = 232/324 (72%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| | ||||||||| | | | Sbjct 1058 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTGGAAACG-G 1116 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 1117 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 1175 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| | || |||||| ||| | ||| Sbjct 1176 GAATAGGGA-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGTTCAGTCGCTGGGTG 1230 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || ||| Sbjct 1231 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 1290 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||| ||| | ||||||| | || |||||||||||||| Sbjct 1291 AGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 1350 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 1351 TAAACAAACTTGGAAATAGCTGGT 1374 >seq1489 Length=2939 Score = 113 bits (124), Expect = 9e-23 Identities = 135/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 154 GAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCT 212 ||||||||| || || |||||| ||| | | |||||| |||| | ||||||| Sbjct 1689 GAAAGCGAGTCTGAAGAGGGCGCTATAGTCGCATGTTCTAGACCCGAAGCGGGGTGATCT 1748 Query 213 ACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTG 272 | ||| | ||||||||||| ||||| | |||||||||||||| ||||||| Sbjct 1749 AGCCATGGGCAGGTTGAAGCGTGGGTAAGACTGCGTGGAGGACCGAACCCACCAACGTTG 1808 Query 273 AAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTC 332 ||||||| ||||||| | || |||||||||||||||||||||||| | |||||| Sbjct 1809 AAAAGTTGGGGGATGACCTGTGGTTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTG 1868 Query 333 GT 334 || Sbjct 1869 GT 1870 >seq962 Length=5977 Score = 113 bits (124), Expect = 9e-23 Identities = 163/222 (73%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||| |||||| ||| |||||||| | ||||||||| Sbjct 2888 CCCGACGAGGGGAGTGAAATAGAACCTGAAACCGGATGCCTACAAACAGTCGGAGCCC-- 2831 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||||||||| || |||| |||||| | | |||| ||||| || || ||| || Sbjct 2830 -GCAAGGGTGACGGCGTACC-TTTGTATAATGGGTCAACGACTTAGT-GTAACTAGCAAG 2774 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||| | | ||| || | || || ||||||||| || || ||||| ||||| Sbjct 2773 CTTAA-GCCGGTAGG--TGTAGGGCGCAGCGAAAGCGAGTCTGAATAGGGCATTGAGTTA 2717 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGG 225 || || ||||| ||||||| |||||| | ||| ||||||| Sbjct 2716 GTTGCATTAGAC-CGAAACCGAGTGATC-AGCCATGAGCAGG 2677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972733139456