Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq949 340 3e-91
seq2677 334 1e-89
seq2682 329 6e-88
seq1010 176 9e-42
seq2403 170 4e-40
seq1316 163 6e-38
seq1489 113 9e-23
seq962 113 9e-23
>seq949
Length=6172
Score = 340 bits (376), Expect = 3e-91
Identities = 276/333 (83%), Gaps = 1/333 (0%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| |||||| |||||||||| |||||| | | | || ||||||||||||||||
Sbjct 3423 CCCGAACAGGGGAGTGAAATAGAACCTGAAACTGTGTGCTTACAAGCGGTCGGAGCGTCC 3364
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| | |||||||||||||||||||||||||||||||||||||| || || | || ||
Sbjct 3363 AGGTGGCGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACTCTTCTCTGGCAAG 3304
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
|||||| | ||||| | || | |||||| ||||||||| || || |||||| |||
Sbjct 3303 GTTAAGTGTTTCAGACACGG-ATCCGAAGCGAAAGCGAGTCTGAATAGGGCGTATAGTCA 3245
Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243
| || | ||||||||||||||||||||||||||| | |||||||||| |||||||| |
Sbjct 3244 GGGGAGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGGTTGAAGGTGCGGTAACAC 3185
Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303
|| ||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||
Sbjct 3184 GTACTGGAGGACCGAACCGATAAACGTTGAAAAGTTTCCGGATGATCTGTGGGTAGGGGT 3125
Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||| |||||||||||||||||||||||||
Sbjct 3124 GAAAGGCTAATCAAACTGGGAAATAGCTCGTAC 3092
>seq2677
Length=1202
Score = 334 bits (370), Expect = 1e-89
Identities = 271/324 (84%), Gaps = 3/324 (1%)
Strand=Plus/Plus
Query 14 GGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTG 73
||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||| ||||
Sbjct 501 GGGGTGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCCAAGTGATTTGGTG 560
Query 74 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG-C 132
||||||||||||||||||||||||||||||||||| | ||||| || |||||||| | |
Sbjct 561 ACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACT-GTCACTGGCAAGGTTAAGCGAC 619
Query 133 TTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTA 192
| || || ||||| || ||||||||| || || |||||| ||| |||| ||
Sbjct 620 TAAAGTTGCGC-AGCCGGAGCGAAAGCGAGTCTGAATAGGGCGCATAGTCAGTGGGAGTA 678
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAG 252
|||||||||| ||||||||||||| | |||| |||||| ||||||| || |||||||
Sbjct 679 GACGCGAAACTTTGTGATCTACCCTTGGTCAGGATGAAGTTCCGGTAACACGGGATGGAG 738
Query 253 GACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCA 312
| |||||| ||||||||||||||||||| |||||| | ||||||||||||||||| |
Sbjct 739 GTCCGAACTAGTAAACGTTGAAAAGTTTTTGGATGAACTGAGGGTAGGGGTGAAAGGCTA 798
Query 313 ATCAAACTGGGAAATAGCTCGTAC 336
||||||||| ||||||||||||||
Sbjct 799 ATCAAACTGAGAAATAGCTCGTAC 822
>seq2682
Length=265177
Score = 329 bits (364), Expect = 6e-88
Identities = 276/332 (83%), Gaps = 11/332 (3%)
Strand=Plus/Minus
Query 7 GAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA 66
||||| ||||||||||||| | |||| || |||| |||||||||||||||||
Sbjct 14958 GAGCAACGGGGTGAAATAGAACTTGAAACCATGCGCTTACAAGCGGTCGGAGCC------ 14905
Query 67 TTCGG-TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGT 125
||||| ||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 14904 TTCGGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTACG-GTTACTGGCAAGGT 14846
Query 126 TAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT 185
||| | | || | | |||||||| ||||||||| || || ||||||| ||| ||
Sbjct 14845 TAATGTTTGAAGAACAGG-AGCCGAAGCGAAAGCGAGTCTGAATAGGGCGATTAGTCAGT 14787
Query 186 GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGC-GGTAACGCG 244
||| |||||||||||| ||||||||||||| || |||||||||| ||| |||||| |
Sbjct 14786 GGCCGTAGACGCGAAACTTTGTGATCTACCCTTGACCAGGTTGAAG-CGCTGGTAACACA 14728
Query 245 TGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTG 304
| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 14727 TCGTGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGAGTTGAGGGTAGGGGTG 14668
Query 305 AAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||||||||||||| ||||||||||||||
Sbjct 14667 AAAGGCCAATCAAACTGAGAAATAGCTCGTAC 14636
>seq1010
Length=5412
Score = 176 bits (194), Expect = 9e-42
Identities = 200/265 (75%), Gaps = 5/265 (2%)
Strand=Plus/Minus
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
|||||| ||| ||||||| || ||| ||| ||| ||| | | || ||| || |||||
Sbjct 1760 GGTGACATCGTACCTTTTGTATTATGGGCCAGCGACTTAATT-TAACGAGCAAGCTTAAG 1702
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| |||| || || || ||||||||| || || |||||| | |||| || |
Sbjct 1701 CCGAT-AGGCG---TATGCGCAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTGTA 1646
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
||||| |||||||| |||||||| ||| ||||||||||||| | |||||| | ||
Sbjct 1645 TTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCACTG 1586
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
||||||||||| ||| |||||||| || ||||||| | || |||||||||||||
Sbjct 1585 GAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCGATGACTTGTGGTTAGGGGTGAAAGG 1526
Query 310 CCAATCAAACTGGGAAATAGCTCGT 334
|||||||||||||||||||||| ||
Sbjct 1525 CCAATCAAACTGGGAAATAGCTGGT 1501
>seq2403
Length=69003
Score = 170 bits (188), Expect = 4e-40
Identities = 240/325 (74%), Gaps = 19/325 (6%)
Strand=Plus/Plus
Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60
|| |||| | ||||| ||||||||| |||||| ||| | |||||||| | |||||||||
Sbjct 7223 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAATCCGTCGGAGCC 7281
Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120
| ||||||||||||||||||| | ||||||||| ||||||||| | ||
Sbjct 7282 TTTAGG---GGTGACGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGCTACGTGGC 7338
Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GA 179
|||||||| | | || | |||||| || ||||||||| || || |||||| ||
Sbjct 7339 GAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGCTTGA 7394
Query 180 GTTG-GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG- 237
|| | |||| |||||| |||| | ||||||||| ||| | |||| ||||| |||||
Sbjct 7395 GTCGCGTGGT-CTAGACCCGAAGCGGTGTGATCTAGCCATGGCCAGGGTGAAG-CGCGGG 7452
Query 238 TAA---CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCG 294
||| |||||| |||| ||||||| | |||||||| | |||||| | |
Sbjct 7453 TAAGACCGCGTG---GAGGCCCGAACCCACCAGGGTTGAAAACCTGGGGGATGAGCTGTG 7509
Query 295 GGTAGGGGTGAAAGGCCAATCAAAC 319
| |||||||||||||||||||||||
Sbjct 7510 GTTAGGGGTGAAAGGCCAATCAAAC 7534
Score = 150 bits (166), Expect = 3e-34
Identities = 239/342 (70%), Gaps = 22/342 (6%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC---------CG 61
|| || ||||||||| |||||| ||| | |||||||||| || ||||| |
Sbjct 4996 AGCGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAAGCCGTGGGAGCGTCGGACGTCA 5055
Query 62 AG--TGATTCG------GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGT 113
|| || || | ||||| |||||||||||| | ||||||||| |||||| | ||
Sbjct 5056 AGCTTGCTTGGCGTCTCGTGACTGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTTGCGGT 5115
Query 114 CACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGG 173
|||||||||| | || | |||||| || ||||||||| | |||||||
Sbjct 5116 GTGTTGCGAGGTTAACC----CGGGTGGGGTAGCCGTAGCGAAAGCGAGTCCGAACAGGG 5171
Query 174 CGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGT 232
|| ||| | || | |||| |||| | |||||||| ||| | |||||||||||
Sbjct 5172 CGTTTCAGTAGCACGCTCAAGACCCGAAGCGGAGTGATCTAGCCATGGGCAGGTTGAAGC 5231
Query 233 CGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCG 292
| ||||| | | |||||||||||||| | |||||||| | ||||||| |
Sbjct 5232 GGAGGTAAGACTTCGTGGAGGACCGAACCCACCAGGGTTGAAAACCTGGGGGATGACCTG 5291
Query 293 CGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|| |||||||||||||||||||||||| | |||||| ||
Sbjct 5292 TGGTTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTGGT 5333
>seq1316
Length=3583
Score = 163 bits (180), Expect = 6e-38
Identities = 232/324 (72%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| |||| || ||||| | ||||||||| | | |
Sbjct 1058 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTGGAAACG-G 1116
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||||||||| ||||||| |||||| | | ||| ||| ||| || |||||||
Sbjct 1117 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 1175
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| | || ||||| || |||| |||| | || |||||| ||| | |||
Sbjct 1176 GAATAGGGA-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGTTCAGTCGCTGGGTG 1230
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || |||
Sbjct 1231 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 1290
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||| |||||||| | |||| ||| | ||||||| | || ||||||||||||||
Sbjct 1291 AGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 1350
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
|| |||||| |||||||||| ||
Sbjct 1351 TAAACAAACTTGGAAATAGCTGGT 1374
>seq1489
Length=2939
Score = 113 bits (124), Expect = 9e-23
Identities = 135/182 (74%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 154 GAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCT 212
||||||||| || || |||||| ||| | | |||||| |||| | |||||||
Sbjct 1689 GAAAGCGAGTCTGAAGAGGGCGCTATAGTCGCATGTTCTAGACCCGAAGCGGGGTGATCT 1748
Query 213 ACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTG 272
| ||| | ||||||||||| ||||| | |||||||||||||| |||||||
Sbjct 1749 AGCCATGGGCAGGTTGAAGCGTGGGTAAGACTGCGTGGAGGACCGAACCCACCAACGTTG 1808
Query 273 AAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTC 332
||||||| ||||||| | || |||||||||||||||||||||||| | ||||||
Sbjct 1809 AAAAGTTGGGGGATGACCTGTGGTTAGGGGTGAAAGGCCAATCAAACTCCGTGATAGCTG 1868
Query 333 GT 334
||
Sbjct 1869 GT 1870
>seq962
Length=5977
Score = 113 bits (124), Expect = 9e-23
Identities = 163/222 (73%), Gaps = 10/222 (5%)
Strand=Plus/Minus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||||||| |||||| ||| |||||||| | |||||||||
Sbjct 2888 CCCGACGAGGGGAGTGAAATAGAACCTGAAACCGGATGCCTACAAACAGTCGGAGCCC-- 2831
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| ||||||||||| || |||| |||||| | | |||| ||||| || || ||| ||
Sbjct 2830 -GCAAGGGTGACGGCGTACC-TTTGTATAATGGGTCAACGACTTAGT-GTAACTAGCAAG 2774
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
|||| | | ||| || | || || ||||||||| || || ||||| |||||
Sbjct 2773 CTTAA-GCCGGTAGG--TGTAGGGCGCAGCGAAAGCGAGTCTGAATAGGGCATTGAGTTA 2717
Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGG 225
|| || ||||| ||||||| |||||| | ||| |||||||
Sbjct 2716 GTTGCATTAGAC-CGAAACCGAGTGATC-AGCCATGAGCAGG 2677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972733139456
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