Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000150.1
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
seq2000 158 8e-37
seq6253 138 8e-31
seq1010 80.6 2e-13
>seq2000
Length=1661
Score = 158 bits (174), Expect = 8e-37
Identities = 110/124 (89%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| ||||||||||||||||||||||||| ||||||| || ||
Sbjct 786 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACTCCGTGGTAACCGTCC 845
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 846 -CCCGAAGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTG 904
Query 135 TGTA 138
||||
Sbjct 905 TGTA 908
>seq6253
Length=1059
Score = 138 bits (152), Expect = 8e-31
Identities = 103/121 (85%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77
||||| ||||||||| ||||||||||||||||| ||| | | ||||||||||||||||
Sbjct 33 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 92
Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137
| ||||| ||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 93 TTACGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 152
Query 138 A 138
|
Sbjct 153 A 153
>seq1010
Length=5412
Score = 80.6 bits (88), Expect = 2e-13
Identities = 92/124 (74%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74
|||||||| ||||||||| |||||||||||||||| | | | ||||| || |
Sbjct 3199 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 3258
Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134
||| ||||| ||| |||| | |||| ||||||||||||||||||||||||
Sbjct 3259 TCCTTGCGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 3318
Query 135 TGTA 138
||||
Sbjct 3319 TGTA 3322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345577731480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |