Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq2000 158 8e-37 seq6253 138 8e-31 seq1010 80.6 2e-13 >seq2000 Length=1661 Score = 158 bits (174), Expect = 8e-37 Identities = 110/124 (89%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| ||||||||||||||||||||||||| ||||||| || || Sbjct 786 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCACTCCGTGGTAACCGTCC 845 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 846 -CCCGAAGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTG 904 Query 135 TGTA 138 |||| Sbjct 905 TGTA 908 >seq6253 Length=1059 Score = 138 bits (152), Expect = 8e-31 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | | |||||||||||||||| Sbjct 33 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 92 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 | ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 93 TTACGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 152 Query 138 A 138 | Sbjct 153 A 153 >seq1010 Length=5412 Score = 80.6 bits (88), Expect = 2e-13 Identities = 92/124 (74%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| || | Sbjct 3199 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCT 3258 Query 75 TCCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTG 134 ||| ||||| ||| |||| | |||| |||||||||||||||||||||||| Sbjct 3259 TCCTTGCGGTTAGCGCACCGGCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGGTG 3318 Query 135 TGTA 138 |||| Sbjct 3319 TGTA 3322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345577731480