Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq809 279 8e-73
seq2264 168 1e-39
seq722 168 1e-39
seq53 122 1e-25
>seq809
Length=160633
Score = 279 bits (308), Expect = 8e-73
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| |
Sbjct 157395 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 157338
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | ||||||
Sbjct 157337 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 157278
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||| ||||| || |||| || | | |||||||||||||||||||
Sbjct 157277 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 157220
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157219 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 157171
>seq2264
Length=278406
Score = 168 bits (186), Expect = 1e-39
Identities = 176/223 (79%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| |
Sbjct 244499 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 244556
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| | ||
Sbjct 244557 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 244616
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| |||| |||| | || | || ||| | |||||||||||||||||
Sbjct 244617 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 244674
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 244675 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 244716
Score = 168 bits (186), Expect = 1e-39
Identities = 176/223 (79%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| |
Sbjct 257200 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 257257
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| | ||
Sbjct 257258 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 257317
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| |||| |||| | || | || ||| | |||||||||||||||||
Sbjct 257318 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 257375
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 257376 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 257417
Score = 168 bits (186), Expect = 1e-39
Identities = 176/223 (79%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| |
Sbjct 274396 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 274453
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| | ||
Sbjct 274454 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 274513
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| |||| |||| | || | || ||| | |||||||||||||||||
Sbjct 274514 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 274571
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 274572 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 274613
Score = 149 bits (164), Expect = 9e-34
Identities = 166/214 (78%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69
||| ||||||| ||| ||||| |||||||||||| | ||| ||||||| ||||||| |
Sbjct 255416 GCAAGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-CCTCGTTCAC 255473
Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT-ACCCGGACC 128
| ||| |||||||||| | ||||| |||||| || ||||| | || ||| ||
Sbjct 255474 GGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTTACCAACCCC 255533
Query 129 TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188
| |||| |||| | || | || ||| | ||||||||||||||||| |||| | ||
Sbjct 255534 TTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCAGCCCCGGAC 255591
Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||||||||||||||||||||||||||| |||||
Sbjct 255592 ATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 255624
Score = 104 bits (114), Expect = 4e-20
Identities = 124/163 (76%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| | ||
Sbjct 255195 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 255136
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| |||| |||| | || | || ||| | |||||||||||||||||
Sbjct 255135 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 255078
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 255077 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 255036
>seq722
Length=8459
Score = 168 bits (186), Expect = 1e-39
Identities = 176/223 (79%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| |
Sbjct 249 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 306
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| | ||
Sbjct 307 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 366
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||| |||| |||| | || | || ||| | |||||||||||||||||
Sbjct 367 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 424
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| | |||||||||||||||||||||||||||||| |||||
Sbjct 425 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 466
>seq53
Length=25752
Score = 122 bits (134), Expect = 1e-25
Identities = 152/202 (75%), Gaps = 5/202 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||| | |||| ||| ||||| || ||||||||| | ||| ||||||| |
Sbjct 5651 GTACAAAGGGCAGAGGCGTATTCAGAGCGAGTTT-ATGACTCGCCCCTACAAGGAATT-C 5708
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| ||||
Sbjct 5709 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGATTT 5768
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| || |||| |||| | || | | ||| | |||||||||||||||||
Sbjct 5769 ACCAACCCCATTCGGGGAAGGACA-AGCAT-GCTGATTTTGCCAGTGTAGCGCGCGTGCA 5826
Query 180 GCCCAGAACATCTAAGGGCATC 201
|||| | |||||||||||||||
Sbjct 5827 GCCCCGGACATCTAAGGGCATC 5848
Score = 122 bits (134), Expect = 1e-25
Identities = 152/202 (75%), Gaps = 5/202 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||| | |||| ||| ||||| || ||||||||| | ||| ||||||| |
Sbjct 21086 GTACAAAGGGCAGAGGCGTATTCAGAGCGAGTTT-ATGACTCGCCCCTACAAGGAATT-C 21143
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119
|||||| | | ||| |||||||||| | ||||| |||||| || ||||| ||||
Sbjct 21144 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGATTT 21203
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| || |||| |||| | || | | ||| | |||||||||||||||||
Sbjct 21204 ACCAACCCCATTCGGGGAAGGACA-AGCAT-GCTGATTTTGCCAGTGTAGCGCGCGTGCA 21261
Query 180 GCCCAGAACATCTAAGGGCATC 201
|||| | |||||||||||||||
Sbjct 21262 GCCCCGGACATCTAAGGGCATC 21283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751949930195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |