Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq809 279 8e-73 seq2264 168 1e-39 seq722 168 1e-39 seq53 122 1e-25 >seq809 Length=160633 Score = 279 bits (308), Expect = 8e-73 Identities = 202/229 (88%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 157395 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGGATT-C 157338 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 157337 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 157278 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||| ||||| || |||| || | | ||||||||||||||||||| Sbjct 157277 ACCCGGACCTTTCGGACAAGGAAGTA--CTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 157220 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157219 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 157171 >seq2264 Length=278406 Score = 168 bits (186), Expect = 1e-39 Identities = 176/223 (79%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| | Sbjct 244499 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 244556 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 244557 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 244616 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 244617 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 244674 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 244675 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 244716 Score = 168 bits (186), Expect = 1e-39 Identities = 176/223 (79%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| | Sbjct 257200 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 257257 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 257258 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 257317 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 257318 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 257375 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 257376 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 257417 Score = 168 bits (186), Expect = 1e-39 Identities = 176/223 (79%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| | Sbjct 274396 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 274453 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 274454 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 274513 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 274514 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 274571 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 274572 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 274613 Score = 149 bits (164), Expect = 9e-34 Identities = 166/214 (78%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 10 GCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAA 69 ||| ||||||| ||| ||||| |||||||||||| | ||| ||||||| ||||||| | Sbjct 255416 GCAAGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-CCTCGTTCAC 255473 Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT-ACCCGGACC 128 | ||| |||||||||| | ||||| |||||| || ||||| | || ||| || Sbjct 255474 GGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTTACCAACCCC 255533 Query 129 TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188 | |||| |||| | || | || ||| | ||||||||||||||||| |||| | || Sbjct 255534 TTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCAGCCCCGGAC 255591 Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||||||||||||||||||||||||||| ||||| Sbjct 255592 ATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 255624 Score = 104 bits (114), Expect = 4e-20 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 255195 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 255136 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 255135 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 255078 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 255077 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 255036 >seq722 Length=8459 Score = 168 bits (186), Expect = 1e-39 Identities = 176/223 (79%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||||| |||||||||||| | ||| ||||||| | Sbjct 249 GTACAAAGGGCAGGGACGTATTCAGAGCGAG-TTGATGACTCGCCCCTACAAGGAATT-C 306 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| | || Sbjct 307 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGGTTT 366 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||| |||| | || | || ||| | ||||||||||||||||| Sbjct 367 ACCAACCCCTTTCGGGGAAGGACA-AG-CACGCTGATTTTGCCAGTGTAGCGCGCGTGCA 424 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 425 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 466 >seq53 Length=25752 Score = 122 bits (134), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| | |||| ||| ||||| || ||||||||| | ||| ||||||| | Sbjct 5651 GTACAAAGGGCAGAGGCGTATTCAGAGCGAGTTT-ATGACTCGCCCCTACAAGGAATT-C 5708 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| |||| Sbjct 5709 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGATTT 5768 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || |||| |||| | || | | ||| | ||||||||||||||||| Sbjct 5769 ACCAACCCCATTCGGGGAAGGACA-AGCAT-GCTGATTTTGCCAGTGTAGCGCGCGTGCA 5826 Query 180 GCCCAGAACATCTAAGGGCATC 201 |||| | ||||||||||||||| Sbjct 5827 GCCCCGGACATCTAAGGGCATC 5848 Score = 122 bits (134), Expect = 1e-25 Identities = 152/202 (75%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| | |||| ||| ||||| || ||||||||| | ||| ||||||| | Sbjct 21086 GTACAAAGGGCAGAGGCGTATTCAGAGCGAGTTT-ATGACTCGCCCCTACAAGGAATT-C 21143 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | | ||| |||||||||| | ||||| |||||| || ||||| |||| Sbjct 21144 CTCGTTCACGGACAATAATTGCAATGTCCGATCCCAATCACGGCAAATTTTCACCGATTT 21203 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| || |||| |||| | || | | ||| | ||||||||||||||||| Sbjct 21204 ACCAACCCCATTCGGGGAAGGACA-AGCAT-GCTGATTTTGCCAGTGTAGCGCGCGTGCA 21261 Query 180 GCCCAGAACATCTAAGGGCATC 201 |||| | ||||||||||||||| Sbjct 21262 GCCCCGGACATCTAAGGGCATC 21283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751949930195