Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq6253 605 7e-171 seq2403 343 4e-92 seq1010 320 4e-85 seq6110 313 6e-83 seq1489 280 4e-73 seq949 266 8e-69 seq2000 255 2e-65 seq2682 215 1e-53 seq962 123 6e-26 seq6661 93.3 1e-16 >seq6253 Length=1059 Score = 605 bits (670), Expect = 7e-171 Identities = 379/407 (93%), Gaps = 1/407 (0%) Strand=Plus/Minus Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 999 Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTG 123 |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| Sbjct 998 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGCAAGACAGATGTG 939 Query 124 AAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCAC-GACTAGAGTGTGTCAGA 182 ||||||||||||| |||||||||| |||||||||||||||| | ||||||| | |||| Sbjct 938 AAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATAGGCTAGAGTACGGCAGA 879 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 878 GGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGG 819 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 CGAAGGCAATCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 759 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| Sbjct 758 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACT 699 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||||| |||||||||||||||||||||||||||||| ||| Sbjct 698 GACTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 652 >seq2403 Length=69003 Score = 343 bits (380), Expect = 4e-92 Identities = 327/412 (79%), Gaps = 7/412 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 3047 TACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGC 3106 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAGACAGGTG 121 ||||||| |||||||| ||||||||||| | || |||||| |||| | | | | || Sbjct 3107 AAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGT-CACGTCGGATG 3165 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGAC-TGCACGACTAGAGTGTGTCA 180 ||||| ||| |||||||||| || |||||| | || ||| | |||||||||| | Sbjct 3166 TGAAAGCCCGGGGCTTAACCCCGGGTCTGCATTCGATACGGGCAAG-CTAGAGTGTGGTA 3224 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | |||||||| ||||||| |||||||||| |||||| ||||||||||| | Sbjct 3225 GGGGAGATCGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGT 3284 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| | | ||||| | ||||||||| | | |||||||||||||||| ||| Sbjct 3285 GGCGAAGGCGGATCTCTGGGCCATTACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAAC 3344 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA---T 357 |||||||||||||||||||||||||||| |||||| | |||||| |||||| || | Sbjct 3345 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGGTGGGAACTAGGTGTTGGCGACATT 3404 Query 358 TTACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || | ||| || ||||||||| | |||| ||||||||||| ||| Sbjct 3405 CCACGTCGTCGGTGCCGCAGCTAACGCATTAAGTGCCCCGCCTGGGGAGTAC 3456 >seq1010 Length=5412 Score = 320 bits (354), Expect = 4e-85 Identities = 313/401 (78%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 5175 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 5116 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||| || |||||| | | |||| |||| ||||||||| Sbjct 5115 GTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGATATTTAAGTCAGGGGTGAAATCC 5056 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | ||| ||| |||| ||| |||| |||| || |||| || ||||| || Sbjct 5055 CGCAGCTCAACTCCGGAACTGCCTTTGATACTGGGTATCTTGAGTATGGAAGAGGTAAGT 4996 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| |||||| ||||||| ||||||||| |||||||||||| |||||||||| Sbjct 4995 GGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGC 4936 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || |||| | ||||||||| | | ||||||||||||||||||||||||||||| Sbjct 4935 GGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGA 4876 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTACTTCCTTG 368 ||||||||||||||||||| |||||||| ||| || ||| | | ||| | | | Sbjct 4875 TACCCTGGTAGTCCACGCCGTAAACGATGAATGTTAGCCGTCGGGCAGTATAC-TGTTCG 4817 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||| | || ||||||||||| ||| Sbjct 4816 GTGGCGCAGCTAACGCATTAAACATTCCGCCTGGGGAGTAC 4776 >seq6110 Length=1082 Score = 313 bits (346), Expect = 6e-83 Identities = 282/352 (80%), Gaps = 2/352 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 372 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 313 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAGACAGGTG 121 |||||| ||||||||||||||||||||| | ||| |||||| ||| |||| || | Sbjct 312 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACTGT-TAAGTTAGAGG 254 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| ||| ||||| ||||| |||||||| |||| |||| | || |||| | || Sbjct 253 TGAAAGCCCAGGGCTCAACCTTGGAATTGCCTTTGATACTGGCAGTCTTGAGTACGGAAG 194 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| || Sbjct 193 AGGTATGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTG 134 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | |||| ||||||||| | || ||||||||||||||||||||| Sbjct 133 GCGAAGGCGACATACTGGTCCGTTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACA 74 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG 353 ||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 73 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGTTGTCGG 22 >seq1489 Length=2939 Score = 280 bits (310), Expect = 4e-73 Identities = 264/334 (79%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||| ||||| ||||||||||||||||||||||||| |||||||| || Sbjct 243 TACCTGCAGAAGAAGCGCCGGCCAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGCGC 302 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121 |||||| |||| ||| ||||||||||| | || |||||| | ||| | | || Sbjct 303 GAGCGTTGTCCGGATTTATTGGGCGTAAAGAGCTCGTAGGCGGCT-TGTCGCGTCGAATG 361 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||||| | ||||| ||| | |||||||| | || | | ||||||| | || Sbjct 362 TGAAATCTCAGGGCTCAACTCTGACATTGCATTCGATACGGGCAGGCTAGAGTTCGGTAG 421 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | ||||||||| ||||||| |||||||||| |||||| ||||||||||| ||| Sbjct 422 GGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGATG 481 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||||| | ||||| | ||||||||| | | |||||||||||||||| |||| Sbjct 482 GCGAAGGCAGGTCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACA 541 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 |||||||||||||||||||||||||| |||||| Sbjct 542 GGATTAGATACCCTGGTAGTCCACGCTGTAAACG 575 >seq949 Length=6172 Score = 266 bits (294), Expect = 8e-69 Identities = 274/356 (77%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 5850 TACCTGGTGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 5791 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| |||| ||| |||| ||||| ||||| |||||| | | |||| ||| | Sbjct 5790 GAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTCTATAAGTCAGTGCT 5731 Query 123 GAAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||| || ||||||||| || | | ||||| | |||||| || |||| | Sbjct 5730 GAAATATCCCGGCTTAACCGGGAGGGTGGCATTGAT-ACTGCAGAGCTTGAGTAAAGTTG 5672 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| ||| |||||| ||||||| ||||||||| ||||||| | ||||||| || Sbjct 5671 AGGTGGGCGGAATTGACGGTGTAGCGGTGAAATGCTTAGATATCGTCAAGAACACCGATT 5612 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||||| | || | | ||||||||| | ||||||||| ||||||| |||||| Sbjct 5611 GCGAAGGCAGCTCACTAAGCTTTAACTGACGCTGAGGCACGAAAGTGTGGGGATCAAACA 5552 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGAT 357 |||||||||||||||||||||||| | |||||| | ||| | |||||| ||| Sbjct 5551 GGATTAGATACCCTGGTAGTCCACACTGTAAACGTTGATTACTCGCTGTTGGCGAT 5496 >seq2000 Length=1661 Score = 255 bits (282), Expect = 2e-65 Identities = 209/253 (83%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 159 ACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGT 218 |||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||| Sbjct 1657 ACTGGGCGACTAGAGTGTGGTAGAGGGTAGTGGAATTCCCGGTGTAGCAGTGAAATGCGT 1598 Query 219 AGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATG 278 ||| || ||||||||| | |||||||||||||| ||||| ||||||||| || | | Sbjct 1597 AGAGATCGGGAGGAACATCCATGGCGAAGGCAGCTACCTGGACCAACACTGACACTGAGG 1538 Query 279 CACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATA 338 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1537 CACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATG 1478 Query 339 TCAACTAGTTGTTGG--GGATTTACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACC 396 |||| | |||||| | | || | ||| || ||||||||||| ||||| || Sbjct 1477 CGAACTGGATGTTGGGTGCAATTTGGCACGCAGTATCGAAGCTAACGCGTTAAGTTCGCC 1418 Query 397 GCCTGGGGAATAC 409 ||||||||| ||| Sbjct 1417 GCCTGGGGAGTAC 1405 >seq2682 Length=265177 Score = 215 bits (238), Expect = 1e-53 Identities = 257/349 (74%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 16544 TACCGAATGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 16485 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| |||| ||| |||| ||||| ||||| ||| || | | |||| ||| || Sbjct 16484 GAGCGTTGTCCGGATTTATTGGGTTTAAAGGGTGCGTAGGTGGCTTTTTAAGTCAGTGGT 16425 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| | ||| ||| || ||| ||| |||| | || || | || Sbjct 16424 GAAATACAGCCGCTCAACGGTTGAGGTGCCATTGATACTGAAAAGCTTGAAATAATTGGA 16365 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | ||||| ||||||| ||||||||| ||||||| ||||||| || | Sbjct 16364 GGCTGCCGGAATGGATGGTGTAGCGGTGAAATGCATAGATATCATCCAGAACACCGATTG 16305 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||||| || ||| |||| || | |||||||||| |||||||||||||| Sbjct 16304 CGAAGGCAGGTGGCTACGATTGGTTTGACACTGAGGCACGAAAGCATGGGGAGCAAACAG 16245 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTT 351 |||||||||||||||||||||| || |||||||| ||| |||||| Sbjct 16244 GATTAGATACCCTGGTAGTCCATGCTGTAAACGATGAGGACTCGTTGTT 16196 >seq962 Length=5977 Score = 123 bits (136), Expect = 6e-26 Identities = 90/103 (87%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 4847 TACCGCAAGAATAAGC-CCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 4789 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG 105 |||||| ||||||| ||||||||||| | ||||| |||||| Sbjct 4788 TAGCGTTGCTCGGAATCACTGGGCGTAAGGGGTGCGTAGGCGG 4746 >seq6661 Length=1004 Score = 93.3 bits (102), Expect = 1e-16 Identities = 51/51 (100%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 53 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289511365792