Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5365 304 2e-80 seq4859 242 5e-62 seq2403 219 6e-55 seq6592 206 4e-51 seq5356 165 1e-38 seq962 149 9e-34 seq1489 147 3e-33 seq1010 147 3e-33 seq2682 143 4e-32 seq1316 132 7e-29 seq949 113 6e-23 seq6569 75.2 2e-11 >seq5365 Length=1235 Score = 304 bits (336), Expect = 2e-80 Identities = 223/256 (87%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| | ||||| |||||||||||||||||||||||||||||| ||||| | |||||||| Sbjct 447 CTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGCCTTACGG-CTTCGCAC 389 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 |||||||||||||||||||||||||||||| | || |||||||| ||||| ||||||| Sbjct 388 GGACCTGTGTTTTTAGTAAACAGTCGCTTCTCGCTGGTCTCTGCGGCCACCCCCAGCTCG 329 Query 121 A-----CACGTCGT--TCACCAGCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172 | || ||| | ||||||| | |||| ||||||||||||||||||||||| |||| Sbjct 328 AGAGTGCAAGTCCTCGTCACCAGGTGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATT 269 Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232 ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 268 TTGCCGAGTTCCTTAACCATAGTTCACCCGAACGCCTCGGTATTCTCTACCTGACCACCT 209 Query 233 GTGTCGGTTTACGGTA 248 | ||||||||| |||| Sbjct 208 GAGTCGGTTTAGGGTA 193 >seq4859 Length=1423 Score = 242 bits (268), Expect = 5e-62 Identities = 213/259 (82%), Gaps = 16/259 (6%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||||||||||||||| ||| || |||||||| Sbjct 567 CTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCT-CTTGTCGACTTCGCAC 509 Query 61 GGACCTGTGTTTTTAGT-AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119 ||||||| ||||||||| ||||||||||||||| || |||||||| || |||| |||| Sbjct 508 GGACCTG-GTTTTTAGTTAAACAGTCGCTTCCCCCTGGTCTCTGCGGCCCACACCCGCTC 450 Query 120 AA------CACGTCGTTCACCA----GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCC 169 | || ||| | || || |||| || ||||||||||||||||||||||| | Sbjct 449 ACGGAGAGCAAGTC-TCCATCACGGGGCAG--GCCCCCCTTCTCCCGAAGTTACGGGGGC 393 Query 170 ATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCA 229 |||||||||| ||||||||||| | ||| | ||| |||||| ||||||||||||||| || Sbjct 392 ATTTTGCCGAGTTCCTTAACCATAATTCTCTCGATCGCCTTGGTATTCTCTACCTGATCA 333 Query 230 CCTGTGTCGGTTTACGGTA 248 ||||||||||||| |||| Sbjct 332 CCTGTGTCGGTTTGGGGTA 314 >seq2403 Length=69003 Score = 219 bits (242), Expect = 6e-55 Identities = 188/228 (82%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 25 CGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGT 84 ||||||||| ||||||||| ||| | | ||||||| |||||||||||||||||||||||| Sbjct 8667 CGTCAGTCCATATACATCGTCTTGC-GACTTCGCATGGACCTGTGTTTTTAGTAAACAGT 8609 Query 85 CGCTTCCCTCTATTCTCTGCGACCACCACCAGCT---CAACACGTCG-TTCACCAGCAGT 140 |||||| | || |||||||| || | | || | || | | |||| || Sbjct 8608 CGCTTCTCGCTGGTCTCTGCGGCCGTCTCGCCCTAGCCTGCAAGAGGCTTCAAGCGCTAC 8549 Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 8548 GGC-CCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCACAGTTCGCC 8490 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||||| ||||||||||||||||||||||||||||||| |||| Sbjct 8489 CGATCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 8442 Score = 170 bits (188), Expect = 3e-40 Identities = 109/119 (92%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 130 TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAAC 189 ||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 6354 TCACCAGGTGTGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAAC 6295 Query 190 CACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| Sbjct 6294 CATAGTTCACCCGAACGCCTCGGTATTCTCTACCTGACCACCTGAGTCGGTTTAGGGTA 6236 >seq6592 Length=1011 Score = 206 bits (228), Expect = 4e-51 Identities = 201/253 (79%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||||||||||||||||| || ||||| || |||||| || || ||| Sbjct 597 TTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCCACTTAC-GTGTTTGCATA 655 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT--- 118 ||||||||||||| |||||||||||| ||| || ||| |||||||| ||| |||| Sbjct 656 GACCTGTGTTTTTGATAAACAGTCGCTACCCCCTTTTCACTGCGACCTCCAATAGCTTGA 715 Query 119 -CAACACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || || || | |||||| || ||| ||||||||||||||||||| ||| ||||| Sbjct 716 CCAGCAAGTGATCTCACCATCAAAGGCGTGCCTTCTCCCGAAGTTACGGCACCAATTTGC 775 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTGTG 235 || ||||||||| | ||||| ||| | ||||| || ||||||| ||| | | ||||||| Sbjct 776 AGAGTTCCTTAACAAGAGTTCTCCCAAGCGCCTGAGGATTCTCT-CCTCATCTACCTGTG 834 Query 236 TCGGTTTACGGTA 248 |||||||| |||| Sbjct 835 TCGGTTTATGGTA 847 >seq5356 Length=1236 Score = 165 bits (182), Expect = 1e-38 Identities = 189/248 (76%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 263 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 321 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||||||| ||| || ||| ||| ||| ||| || Sbjct 322 AGCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACC-CCATCAT---- 376 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||| | | | ||| | |||| ||||||||||| | || |||||||| Sbjct 377 ACTTG-CGTATAATGGG---GTCACGC-TTCTTCCGAAGTTACGCGTGCAATTTGCCGAG 431 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| |||||||||||||||||||||||| Sbjct 432 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTCGGT 491 Query 241 TTACGGTA 248 || |||| Sbjct 492 TTCGGGTA 499 >seq962 Length=5977 Score = 149 bits (164), Expect = 9e-34 Identities = 186/251 (74%), Gaps = 13/251 (5%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTA---CCGTCTTCG 57 |||| ||||| ||||||||||||||||| || ||||| ||| ||| ||| ||| | Sbjct 1593 CTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCGACTTAG 1652 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||||| |||||||||||| ||| || || ||| | || || Sbjct 1653 CAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGC------CCCCTGC 1706 Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 | || | | || | ||| ||| | |||||| |||||| ||||| | || |||||| Sbjct 1707 T--ACTGCTTGCGCAATAACAG-GGC-CTCCTTCTTCCGAAGGTACGGAGGCAATTTGCC 1762 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || |||||| | ||| ||| | | | |||||| |||| ||||||||||||||||||||| Sbjct 1763 GAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTC 1822 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 1823 GGTTTCGGGTA 1833 >seq1489 Length=2939 Score = 147 bits (162), Expect = 3e-33 Identities = 98/108 (91%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| Sbjct 2893 GGCCCCCCTTCTCCCTAAGTTACGGGGGCAATTTGCCGAGTTCCTTAACCACAGTTCACC 2834 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||| |||||||||||||||||||||||||||||||| |||| Sbjct 2833 CG-TCGCCTCGGTATTCTCTACCTGACCACCTGTGTCGGTTTAGGGTA 2787 >seq1010 Length=5412 Score = 147 bits (162), Expect = 3e-33 Identities = 181/248 (73%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| || ||| | | |||||| Sbjct 570 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 628 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| |||||||| || ||| || ||| ||| |||| | ||| Sbjct 629 AGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACGGCACGCT-- 686 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | ||||||| | |||| |||||||||||||| | | ||||||| Sbjct 687 --------TGCGCATGCAGTGGGCCTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAG 738 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | || ||||| | | | |||||| |||| ||||||| | |||||||||||||| Sbjct 739 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 798 Query 241 TTACGGTA 248 || |||| Sbjct 799 TTCGGGTA 806 >seq2682 Length=265177 Score = 143 bits (158), Expect = 4e-32 Identities = 180/248 (73%), Gaps = 18/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || |||| | || || ||| Sbjct 13671 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACGTCAACTTTC-GTTTTGGCAG 13729 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | | ||||||||| || | Sbjct 13730 AGCCCTGTGTTTTTGCTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCTC---------- 13779 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || ||| | ||| ||||||||||||||||||| ||| | |||||||| Sbjct 13780 -----TCTTTG--CAGAGGAGGCTCCCCTTCTCCCGAAGTTACAGGGTTAATTTGCCGAG 13832 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| || ||||| ||| | |||||| || ||| | ||| |||||||||||| Sbjct 13833 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGAATATTCTTCTCGACTACCTGTGTCGGT 13892 Query 241 TTACGGTA 248 |||||||| Sbjct 13893 TTACGGTA 13900 >seq1316 Length=3583 Score = 132 bits (146), Expect = 7e-29 Identities = 180/247 (73%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 2404 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 2346 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||| | ||| ||| | |||| | || Sbjct 2345 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCCCGTTGGGCTCGCCTTGT 2286 Query 127 C---GTTCACCAGC--AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 ||||||| | || |||| ||||||||||||||||||| || |||||||| | Sbjct 2285 ACAGGTTCACCTACTTAG-GGCATACCTTCTCCCGAAGTTACGGTATCAATTTGCCGAGT 2227 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| || ||||| | | | |||||||| || ||| | | |||| ||||||||| Sbjct 2226 TCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTT 2167 Query 242 TACGGTA 248 | ||||| Sbjct 2166 TGCGGTA 2160 >seq949 Length=6172 Score = 113 bits (124), Expect = 6e-23 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 || ||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||| | Sbjct 2193 GCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTC 2252 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | |||||| || |||| || | |||||||||||||| ||||| Sbjct 2253 GAGCACCTTAGAATCCTCTTCCCGGATACCTGTGTCGGTTTGCGGTA 2299 >seq6569 Length=1015 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 931 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGA 989 Query 62 GACCTGTGTTTTTAGTAAACAGTCGC 87 | |||||||||| ||||||||||| Sbjct 990 GTGCTGTGTTTTTGATAAACAGTCGC 1015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694353765329