Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq5365 304 2e-80
seq4859 242 5e-62
seq2403 219 6e-55
seq6592 206 4e-51
seq5356 165 1e-38
seq962 149 9e-34
seq1489 147 3e-33
seq1010 147 3e-33
seq2682 143 4e-32
seq1316 132 7e-29
seq949 113 6e-23
seq6569 75.2 2e-11
>seq5365
Length=1235
Score = 304 bits (336), Expect = 2e-80
Identities = 223/256 (87%), Gaps = 9/256 (4%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| | ||||| |||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 447 CTTAACGTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGCCTTACGG-CTTCGCAC 389
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
|||||||||||||||||||||||||||||| | || |||||||| ||||| |||||||
Sbjct 388 GGACCTGTGTTTTTAGTAAACAGTCGCTTCTCGCTGGTCTCTGCGGCCACCCCCAGCTCG 329
Query 121 A-----CACGTCGT--TCACCAGCAG-TGGCACCCCTTCTCCCGAAGTTACGGGGCCATT 172
| || ||| | ||||||| | |||| ||||||||||||||||||||||| ||||
Sbjct 328 AGAGTGCAAGTCCTCGTCACCAGGTGATGGCCCCCCTTCTCCCGAAGTTACGGGGGCATT 269
Query 173 TTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCT 232
||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 268 TTGCCGAGTTCCTTAACCATAGTTCACCCGAACGCCTCGGTATTCTCTACCTGACCACCT 209
Query 233 GTGTCGGTTTACGGTA 248
| ||||||||| ||||
Sbjct 208 GAGTCGGTTTAGGGTA 193
>seq4859
Length=1423
Score = 242 bits (268), Expect = 5e-62
Identities = 213/259 (82%), Gaps = 16/259 (6%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||| ||||||||||||||||| ||| || ||||||||
Sbjct 567 CTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCT-CTTGTCGACTTCGCAC 509
Query 61 GGACCTGTGTTTTTAGT-AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC 119
||||||| ||||||||| ||||||||||||||| || |||||||| || |||| ||||
Sbjct 508 GGACCTG-GTTTTTAGTTAAACAGTCGCTTCCCCCTGGTCTCTGCGGCCCACACCCGCTC 450
Query 120 AA------CACGTCGTTCACCA----GCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCC 169
| || ||| | || || |||| || ||||||||||||||||||||||| |
Sbjct 449 ACGGAGAGCAAGTC-TCCATCACGGGGCAG--GCCCCCCTTCTCCCGAAGTTACGGGGGC 393
Query 170 ATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCA 229
|||||||||| ||||||||||| | ||| | ||| |||||| ||||||||||||||| ||
Sbjct 392 ATTTTGCCGAGTTCCTTAACCATAATTCTCTCGATCGCCTTGGTATTCTCTACCTGATCA 333
Query 230 CCTGTGTCGGTTTACGGTA 248
||||||||||||| ||||
Sbjct 332 CCTGTGTCGGTTTGGGGTA 314
>seq2403
Length=69003
Score = 219 bits (242), Expect = 6e-55
Identities = 188/228 (82%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 25 CGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGT 84
||||||||| ||||||||| ||| | | ||||||| ||||||||||||||||||||||||
Sbjct 8667 CGTCAGTCCATATACATCGTCTTGC-GACTTCGCATGGACCTGTGTTTTTAGTAAACAGT 8609
Query 85 CGCTTCCCTCTATTCTCTGCGACCACCACCAGCT---CAACACGTCG-TTCACCAGCAGT 140
|||||| | || |||||||| || | | || | || | | |||| ||
Sbjct 8608 CGCTTCTCGCTGGTCTCTGCGGCCGTCTCGCCCTAGCCTGCAAGAGGCTTCAAGCGCTAC 8549
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 8548 GGC-CCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCACAGTTCGCC 8490
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 8489 CGATCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTA 8442
Score = 170 bits (188), Expect = 3e-40
Identities = 109/119 (92%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 130 TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAAC 189
||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 6354 TCACCAGGTGTGGCCCCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAAC 6295
Query 190 CACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 6294 CATAGTTCACCCGAACGCCTCGGTATTCTCTACCTGACCACCTGAGTCGGTTTAGGGTA 6236
>seq6592
Length=1011
Score = 206 bits (228), Expect = 4e-51
Identities = 201/253 (79%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| ||||||| ||||||||||||||||| || ||||| || |||||| || || |||
Sbjct 597 TTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCCACTTAC-GTGTTTGCATA 655
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCT--- 118
||||||||||||| |||||||||||| ||| || ||| |||||||| ||| ||||
Sbjct 656 GACCTGTGTTTTTGATAAACAGTCGCTACCCCCTTTTCACTGCGACCTCCAATAGCTTGA 715
Query 119 -CAACACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176
|| || || | |||||| || ||| ||||||||||||||||||| ||| |||||
Sbjct 716 CCAGCAAGTGATCTCACCATCAAAGGCGTGCCTTCTCCCGAAGTTACGGCACCAATTTGC 775
Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTGTG 235
|| ||||||||| | ||||| ||| | ||||| || ||||||| ||| | | |||||||
Sbjct 776 AGAGTTCCTTAACAAGAGTTCTCCCAAGCGCCTGAGGATTCTCT-CCTCATCTACCTGTG 834
Query 236 TCGGTTTACGGTA 248
|||||||| ||||
Sbjct 835 TCGGTTTATGGTA 847
>seq5356
Length=1236
Score = 165 bits (182), Expect = 1e-38
Identities = 189/248 (76%), Gaps = 11/248 (4%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | |||||||
Sbjct 263 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTGC-GACTTCGCAG 321
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| |||||||||||| ||| || ||| ||| ||| ||| ||
Sbjct 322 AGCCCTGTGTTTTTGATAAACAGTCGCTACCCCCTGGTCTGTGCCACC-CCATCAT---- 376
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| | ||| | | | ||| | |||| ||||||||||| | || ||||||||
Sbjct 377 ACTTG-CGTATAATGGG---GTCACGC-TTCTTCCGAAGTTACGCGTGCAATTTGCCGAG 431
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| | || ||||| | | | |||||| |||| ||||||||||||||||||||||||
Sbjct 432 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTCGGT 491
Query 241 TTACGGTA 248
|| ||||
Sbjct 492 TTCGGGTA 499
>seq962
Length=5977
Score = 149 bits (164), Expect = 9e-34
Identities = 186/251 (74%), Gaps = 13/251 (5%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTA---CCGTCTTCG 57
|||| ||||| ||||||||||||||||| || ||||| ||| ||| ||| ||| |
Sbjct 1593 CTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCGACTTAG 1652
Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117
|| | ||||||||||| |||||||||||| ||| || || ||| | || ||
Sbjct 1653 CAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGC------CCCCTGC 1706
Query 118 TCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177
| || | | || | ||| ||| | |||||| |||||| ||||| | || ||||||
Sbjct 1707 T--ACTGCTTGCGCAATAACAG-GGC-CTCCTTCTTCCGAAGGTACGGAGGCAATTTGCC 1762
Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237
|| |||||| | ||| ||| | | | |||||| |||| |||||||||||||||||||||
Sbjct 1763 GAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGTC 1822
Query 238 GGTTTACGGTA 248
||||| ||||
Sbjct 1823 GGTTTCGGGTA 1833
>seq1489
Length=2939
Score = 147 bits (162), Expect = 3e-33
Identities = 98/108 (91%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||| ||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 2893 GGCCCCCCTTCTCCCTAAGTTACGGGGGCAATTTGCCGAGTTCCTTAACCACAGTTCACC 2834
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2833 CG-TCGCCTCGGTATTCTCTACCTGACCACCTGTGTCGGTTTAGGGTA 2787
>seq1010
Length=5412
Score = 147 bits (162), Expect = 3e-33
Identities = 181/248 (73%), Gaps = 11/248 (4%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| || ||| | | ||||||
Sbjct 570 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCATCTTGCGAT-TTCGCAG 628
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| |||||||| || ||| || ||| ||| |||| | |||
Sbjct 629 AGCCCTGTGTTTTTGTTAAACAGTTGCCACCCCCTGGTCTGTGCCCCCACGGCACGCT-- 686
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| | | ||||||| | |||| |||||||||||||| | | |||||||
Sbjct 687 --------TGCGCATGCAGTGGGCCTCCTTATCCCGAAGTTACGGAGGTAAATTGCCGAG 738
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
|||||| | || ||||| | | | |||||| |||| ||||||| | ||||||||||||||
Sbjct 739 TTCCTTCAACATAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCTGTGTCGGT 798
Query 241 TTACGGTA 248
|| ||||
Sbjct 799 TTCGGGTA 806
>seq2682
Length=265177
Score = 143 bits (158), Expect = 4e-32
Identities = 180/248 (73%), Gaps = 18/248 (7%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||| ||||| || ||||| || |||| | || || |||
Sbjct 13671 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACGTCAACTTTC-GTTTTGGCAG 13729
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| ||||||||||| | | ||||||||| || |
Sbjct 13730 AGCCCTGTGTTTTTGCTAAACAGTCGCCTGGGCCATTTCTCTGCGGCCTC---------- 13779
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| || ||| | ||| ||||||||||||||||||| ||| | ||||||||
Sbjct 13780 -----TCTTTG--CAGAGGAGGCTCCCCTTCTCCCGAAGTTACAGGGTTAATTTGCCGAG 13832
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| || ||||| ||| | |||||| || ||| | ||| ||||||||||||
Sbjct 13833 TTCCTTAGCCGTGATTCACTCGAGCACCTTAGAATATTCTTCTCGACTACCTGTGTCGGT 13892
Query 241 TTACGGTA 248
||||||||
Sbjct 13893 TTACGGTA 13900
>seq1316
Length=3583
Score = 132 bits (146), Expect = 7e-29
Identities = 180/247 (73%), Gaps = 7/247 (3%)
Strand=Plus/Minus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 2404 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 2346
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| ||||||||||| || | ||| | ||| ||| | |||| | ||
Sbjct 2345 GTGTTTTTATTAAACAGTCGCAGCCACCGATTTTTTGCAACCCCGTTGGGCTCGCCTTGT 2286
Query 127 C---GTTCACCAGC--AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181
||||||| | || |||| ||||||||||||||||||| || |||||||| |
Sbjct 2285 ACAGGTTCACCTACTTAG-GGCATACCTTCTCCCGAAGTTACGGTATCAATTTGCCGAGT 2227
Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
||||| || ||||| | | | |||||||| || ||| | | |||| |||||||||
Sbjct 2226 TCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGTT 2167
Query 242 TACGGTA 248
| |||||
Sbjct 2166 TGCGGTA 2160
>seq949
Length=6172
Score = 113 bits (124), Expect = 6e-23
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|| ||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |
Sbjct 2193 GCGCCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATGATTCACTC 2252
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | |||||| || |||| || | |||||||||||||| |||||
Sbjct 2253 GAGCACCTTAGAATCCTCTTCCCGGATACCTGTGTCGGTTTGCGGTA 2299
>seq6569
Length=1015
Score = 75.2 bits (82), Expect = 2e-11
Identities = 69/86 (80%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| ||||||| |||||||||||||||| || ||||| || |||| ||| || |||
Sbjct 931 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGA 989
Query 62 GACCTGTGTTTTTAGTAAACAGTCGC 87
| |||||||||| |||||||||||
Sbjct 990 GTGCTGTGTTTTTGATAAACAGTCGC 1015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694353765329
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