Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq2682 181 1e-43
seq949 143 3e-32
seq1010 100 3e-19
seq4859 93.3 4e-17
seq5356 86.0 7e-15
seq2403 82.4 8e-14
seq962 82.4 8e-14
seq5365 78.8 1e-12
seq138 77.0 3e-12
seq1316 75.2 1e-11
>seq2682
Length=265177
Score = 181 bits (200), Expect = 1e-43
Identities = 145/175 (83%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||| |||||| ||||||| | |||||| |||||| ||| ||||||||||||| ||
Sbjct 13897 CGTAAACCGACACAGGTAGTCGAGAAGAATATTCTAAGGTGCTCGAGTGAATCACGGCTA 13838
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||| |||||| | ||||||||||||||||| || ||| ||| | | | || | ||
Sbjct 13837 AGGAACTCGGCAAATTAACCCTGTAACTTCGGGAGAAGGGGAGCCTCCTCTGCAAAGAGA 13778
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|| ||||||||| || |||||| |||||||| ||||||||||||||| ||||||
Sbjct 13777 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAGCAAAAACACAGGGCTCTGCCAA 13723
>seq949
Length=6172
Score = 143 bits (158), Expect = 3e-32
Identities = 139/175 (79%), Gaps = 3/175 (2%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || ||
Sbjct 2296 CGCAAACCGACACAGGTATCCGGGAAGAGGATTCTAAGGTGCTCGAGTGAATCATGGCTA 2237
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||| |||||| || |||||||||||||||| ||||| | || ||| ||| |
Sbjct 2236 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCT-GGCAGCAATATCA 2179
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| ||
Sbjct 2178 -GCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAA 2125
>seq1010
Length=5412
Score = 100 bits (110), Expect = 3e-19
Identities = 130/179 (73%), Gaps = 7/179 (4%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | ||||
Sbjct 800 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 741
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC------TACCCAGAAATG 138
|||| ||||| | | | ||||||||||||||| | | ||| | | || ||
Sbjct 740 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCCACTGCATGCGCAAGCGTG 681
Query 139 -GGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| ||| ||| ||| ||| |||||||||||||||||||||||||||| ||| ||
Sbjct 680 CCGTGGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAA 622
>seq4859
Length=1423
Score = 93.3 bits (102), Expect = 4e-17
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || || ||| || |||| |||||| | ||| |||| | |||||||
Sbjct 319 CAAACCGACACAGGTGATCAGGTAGAGAATACCAAGGCGATCGAGAGAATTATGGTTAAG 378
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||| |||||| || ||| |||||||||||| || ||| ||| ||| | ||||
Sbjct 379 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCTGCCCCGTGATGG 434
>seq5356
Length=1236
Score = 86.0 bits (94), Expect = 7e-15
Identities = 128/179 (72%), Gaps = 7/179 (4%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || ||| ||| || ||||| |||||||||||| ||| | | | ||||
Sbjct 493 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 434
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG-GTCCC-----TACCCAGAAATG 138
|||| |||||| || | |||||||||| | || | | ||| ||| || |||
Sbjct 433 AACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCCATTATACGCAAGTATG 374
Query 139 GGAGGGCG-CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||| | || ||| ||| || |||||||| ||||||||||||||| ||| ||
Sbjct 373 ATGGGGTGGCACAGACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAA 315
>seq2403
Length=69003
Score = 82.4 bits (90), Expect = 8e-14
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || ||| ||| || |||| |||||| | | | ||| |||||||
Sbjct 8447 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGATCGGGCGAACTGTGGTTAAG 8506
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTA 128
||||| |||||| || ||| |||||||||||| || ||| || ||
Sbjct 8507 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGCCGTA 8551
Score = 78.8 bits (86), Expect = 1e-12
Identities = 76/98 (78%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| ||| || || ||| ||| || |||| ||||| | | ||||| | ||||||||
Sbjct 6242 AAACCGACTCAGGTGGTCAGGTAGAGAATACCGAGGCGTTCGGGTGAACTATGGTTAAGG 6301
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122
|||| |||||| || ||| |||||||||||| || |||
Sbjct 6302 AACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 6339
>seq962
Length=5977
Score = 82.4 bits (90), Expect = 8e-14
Identities = 125/179 (70%), Gaps = 7/179 (4%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || ||| ||| || ||||| |||||||||||| ||| | ||||
Sbjct 1827 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAAGTGTCCTGAAGG 1768
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-------CCAGAAAT 137
|||| |||||| || | | ||| |||||| | || | | |||| | || | |
Sbjct 1767 AACTCGGCAAATTGCCTCCGTACCTTCGGAAGAAGGAGGCCCTGTTATTGCGCAAGCAGT 1708
Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| |||| ||| || ||| || |||||||| ||||||||||||||| ||| ||
Sbjct 1707 AGCAGGGGGCACAGGCCAGGGGGTAGCGACTGTTTAGCAAAAACACAGGGCTCTGCTAA 1649
>seq5365
Length=1235
Score = 78.8 bits (86), Expect = 1e-12
Identities = 76/98 (78%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| ||| || || ||| ||| || |||| ||||| | | ||||| | ||||||||
Sbjct 199 AAACCGACTCAGGTGGTCAGGTAGAGAATACCGAGGCGTTCGGGTGAACTATGGTTAAGG 258
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122
|||| |||||| || ||| |||||||||||| || |||
Sbjct 259 AACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 296
>seq138
Length=22120
Score = 77.0 bits (84), Expect = 3e-12
Identities = 107/148 (72%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 26 AACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGA 85
|||| |||||||| || | |||||| |||| || ||| ||| || ||||||||
Sbjct 14476 AACGAACACACGTGGTTAAGGAGAATATCCTAAAGCCAGCGAGCAAATTACAGTTAAGGA 14417
Query 86 ACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGC 145
||| |||||| | |||||||| || | ||||| |||| |||| || ||| ||| |
Sbjct 14416 ACTCGGCAAATTAGCCCTGTAAGTTAGCGATAAGGGGTGCCTA--GAGCAAT-CTAGGCC 14360
Query 146 GCAGAGAATAGGTCCAGGCAACTGTTTA 173
|||| ||| ||| | | | ||||||||
Sbjct 14359 GCAGTGAAGAGGCACGGACGACTGTTTA 14332
>seq1316
Length=3583
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80
||||||| ||||| || || | ||| ||| |||||||||||||| ||| ||| ||
Sbjct 2163 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA-GGAG 2221
Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
|||||||| |||||| ||| | |||||||||||| ||
Sbjct 2222 AAGGAACTCGGCAAATTGATACCGTAACTTCGGGAGAA 2259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531164631542
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |