Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2682 181 1e-43 seq949 143 3e-32 seq1010 100 3e-19 seq4859 93.3 4e-17 seq5356 86.0 7e-15 seq2403 82.4 8e-14 seq962 82.4 8e-14 seq5365 78.8 1e-12 seq138 77.0 3e-12 seq1316 75.2 1e-11 >seq2682 Length=265177 Score = 181 bits (200), Expect = 1e-43 Identities = 145/175 (83%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| ||||||| | |||||| |||||| ||| ||||||||||||| || Sbjct 13897 CGTAAACCGACACAGGTAGTCGAGAAGAATATTCTAAGGTGCTCGAGTGAATCACGGCTA 13838 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | ||||||||||||||||| || ||| ||| | | | || | || Sbjct 13837 AGGAACTCGGCAAATTAACCCTGTAACTTCGGGAGAAGGGGAGCCTCCTCTGCAAAGAGA 13778 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| || |||||| |||||||| ||||||||||||||| |||||| Sbjct 13777 GGCCGCAGAGAAATGGCCCAGGCGACTGTTTAGCAAAAACACAGGGCTCTGCCAA 13723 >seq949 Length=6172 Score = 143 bits (158), Expect = 3e-32 Identities = 139/175 (79%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| ||| |||| || || |||||| ||| |||||||||| || || Sbjct 2296 CGCAAACCGACACAGGTATCCGGGAAGAGGATTCTAAGGTGCTCGAGTGAATCATGGCTA 2237 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || |||||||||||||||| ||||| | || ||| ||| | Sbjct 2236 AGGAACTCGGCAAAATGGCCCTGTAACTTCGGGA-GAAGGGGCGCT-GGCAGCAATATCA 2179 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||| ||| |||||| ||||||||||||||||||| |||| ||| || Sbjct 2178 -GCCGCAGTGAAAAGGCCCAGGCGACTGTTTAACAAAAACACATGGCTTTGCAAA 2125 >seq1010 Length=5412 Score = 100 bits (110), Expect = 3e-19 Identities = 130/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || | | ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 800 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 741 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCC------TACCCAGAAATG 138 |||| ||||| | | | ||||||||||||||| | | ||| | | || || Sbjct 740 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCCACTGCATGCGCAAGCGTG 681 Query 139 -GGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||| ||| ||| ||| |||||||||||||||||||||||||||| ||| || Sbjct 680 CCGTGGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAA 622 >seq4859 Length=1423 Score = 93.3 bits (102), Expect = 4e-17 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || ||| || |||| |||||| | ||| |||| | ||||||| Sbjct 319 CAAACCGACACAGGTGATCAGGTAGAGAATACCAAGGCGATCGAGAGAATTATGGTTAAG 378 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||| |||||| || ||| |||||||||||| || ||| ||| ||| | |||| Sbjct 379 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCTGCCCCGTGATGG 434 >seq5356 Length=1236 Score = 86.0 bits (94), Expect = 7e-15 Identities = 128/179 (72%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| ||| || ||||| |||||||||||| ||| | | | |||| Sbjct 493 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG 434 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG-GTCCC-----TACCCAGAAATG 138 |||| |||||| || | |||||||||| | || | | ||| ||| || ||| Sbjct 433 AACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCCATTATACGCAAGTATG 374 Query 139 GGAGGGCG-CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| | || ||| ||| || |||||||| ||||||||||||||| ||| || Sbjct 373 ATGGGGTGGCACAGACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAA 315 >seq2403 Length=69003 Score = 82.4 bits (90), Expect = 8e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || |||| |||||| | | | ||| ||||||| Sbjct 8447 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGATCGGGCGAACTGTGGTTAAG 8506 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTA 128 ||||| |||||| || ||| |||||||||||| || ||| || || Sbjct 8507 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGGGCCGTA 8551 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| ||| || || ||| ||| || |||| ||||| | | ||||| | |||||||| Sbjct 6242 AAACCGACTCAGGTGGTCAGGTAGAGAATACCGAGGCGTTCGGGTGAACTATGGTTAAGG 6301 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 |||| |||||| || ||| |||||||||||| || ||| Sbjct 6302 AACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 6339 >seq962 Length=5977 Score = 82.4 bits (90), Expect = 8e-14 Identities = 125/179 (70%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| ||| || ||||| |||||||||||| ||| | |||| Sbjct 1827 AAACCGACACAGGTGGTCAGGTAGAGTATACCAAGGCGCTTGAGAGAAGTGTCCTGAAGG 1768 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTAC-------CCAGAAAT 137 |||| |||||| || | | ||| |||||| | || | | |||| | || | | Sbjct 1767 AACTCGGCAAATTGCCTCCGTACCTTCGGAAGAAGGAGGCCCTGTTATTGCGCAAGCAGT 1708 Query 138 GGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | |||| ||| || ||| || |||||||| ||||||||||||||| ||| || Sbjct 1707 AGCAGGGGGCACAGGCCAGGGGGTAGCGACTGTTTAGCAAAAACACAGGGCTCTGCTAA 1649 >seq5365 Length=1235 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| ||| || || ||| ||| || |||| ||||| | | ||||| | |||||||| Sbjct 199 AAACCGACTCAGGTGGTCAGGTAGAGAATACCGAGGCGTTCGGGTGAACTATGGTTAAGG 258 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGG 122 |||| |||||| || ||| |||||||||||| || ||| Sbjct 259 AACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGGG 296 >seq138 Length=22120 Score = 77.0 bits (84), Expect = 3e-12 Identities = 107/148 (72%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 26 AACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGA 85 |||| |||||||| || | |||||| |||| || ||| ||| || |||||||| Sbjct 14476 AACGAACACACGTGGTTAAGGAGAATATCCTAAAGCCAGCGAGCAAATTACAGTTAAGGA 14417 Query 86 ACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGC 145 ||| |||||| | |||||||| || | ||||| |||| |||| || ||| ||| | Sbjct 14416 ACTCGGCAAATTAGCCCTGTAAGTTAGCGATAAGGGGTGCCTA--GAGCAAT-CTAGGCC 14360 Query 146 GCAGAGAATAGGTCCAGGCAACTGTTTA 173 |||| ||| ||| | | | |||||||| Sbjct 14359 GCAGTGAAGAGGCACGGACGACTGTTTA 14332 >seq1316 Length=3583 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| ||| || Sbjct 2163 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA-GGAG 2221 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||| |||||| ||| | |||||||||||| || Sbjct 2222 AAGGAACTCGGCAAATTGATACCGTAACTTCGGGAGAA 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531164631542