Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq6569 156 4e-36 seq1316 152 5e-35 seq6592 109 5e-22 seq5356 105 6e-21 seq2682 104 2e-20 seq1010 102 8e-20 seq962 84.2 2e-14 seq5365 78.8 9e-13 >seq6569 Length=1015 Score = 156 bits (172), Expect = 4e-36 Identities = 89/91 (98%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GCGACTGTTTATCAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 956 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 |||||||||||||| |||||||||||||||| Sbjct 955 CGCCTGCCCGGTGCTGGAAGGTTAATTGATG 925 >seq1316 Length=3583 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2322 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 2381 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 2382 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 2415 Score = 73.4 bits (80), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 2/59 (3%) Strand=Plus/Plus Query 100 AACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 |||||||| |||||||||||||| |||||||| ||||||||| ||||| |||| ||||| Sbjct 2476 AACACGAA-GTGGACGTATAGGG-GTGACGCCGGCCCGGTGCTGGAAGATTAAATGATG 2532 >seq6592 Length=1011 Score = 109 bits (120), Expect = 5e-22 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25 ACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAA 84 ||||||| ||||| || ||||| || | ||| | |||||||||||| |||| Sbjct 724 ACTTGCTGGTCAAGCTATTGGAGGTCGCAGTGAAAAGGGGGTAGCGACTGTTTATCAAAA 665 Query 85 ACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGG 144 |||||| || |||||||||| ||||||| ||||| || ||||||||||||||||| || Sbjct 664 ACACAGGTCTATGCAAACACGTAAGTGGAAGTATATGGGCTGACGCCTGCCCGGTGCTGG 605 Query 145 AAGGTTAA 152 |||||||| Sbjct 604 AAGGTTAA 597 >seq5356 Length=1236 Score = 105 bits (116), Expect = 6e-21 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | |||||||||||| |||||||||| |||||| || || ||| ||||| Sbjct 359 ACCAGGGGGTAGCGACTGTTTATCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGT 300 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| ||||||||||||||||| |||||||||| Sbjct 299 ATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAA 264 >seq2682 Length=265177 Score = 104 bits (114), Expect = 2e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| |||||| || |||||||| ||||||||||| ||| Sbjct 13756 GCGACTGTTTAGCAAAAACACAGGGCTCTGCCAAAACGAAAGTTGACGTATAGGGCCTGA 13697 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 | |||||||||||| |||||||||| Sbjct 13696 CACCTGCCCGGTGCTGGAAGGTTAA 13672 >seq1010 Length=5412 Score = 102 bits (112), Expect = 8e-20 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||| | || |||||||| |||||||||| |||||| || || ||| ||||| Sbjct 666 ACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGT 607 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||| |||||||||||||||||||||||||||| Sbjct 606 ATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAA 571 >seq962 Length=5977 Score = 84.2 bits (92), Expect = 2e-14 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||| |||||| || || ||| ||||||||||| Sbjct 1682 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 1623 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAATTG 155 |||||||||||||||||| ||||||||| || Sbjct 1622 CTGACGCCTGCCCGGTGCCTGAAGGTTAAGTG 1591 >seq5365 Length=1235 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 || || ||| ||||| | ||||||||||| ||||||||||| | ||| || || Sbjct 341 GGCCGCAGAGACCAGCGAGAAGCGACTGTTTACTAAAAACACAGGTCCGTGCGAAGCCGT 400 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| || ||||| || ||||||||||||||||| |||| ||||| Sbjct 401 AAGGCGATGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476768253613