Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq2264 95.1 6e-18 seq809 82.4 4e-14 >seq2264 Length=278406 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 249132 GGAAAAGAAACTAACGAGGATTCCCGTAGTAACGGCGAGTGAACTGGGAAGAGTCCAGCG 249073 Query 61 CCGAATC 67 | ||||| Sbjct 249072 CTGAATC 249066 Score = 95.1 bits (104), Expect = 6e-18 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| Sbjct 261875 GGAAAAGAAACTAACGAGGATTCCCGTAGTAACGGCGAGTGAACTGGGAAGAGTCCAGCG 261816 Query 61 CCGAATC 67 | ||||| Sbjct 261815 CTGAATC 261809 >seq809 Length=160633 Score = 82.4 bits (90), Expect = 4e-14 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 4 AAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG-CC 62 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||| | Sbjct 142355 AAAGAAACTAACGAGGATTCCCGTAGTAACGGCGAGTGAACTGGGAAGAGTCCAGCGACT 142414 Query 63 GAATC 67 ||||| Sbjct 142415 GAATC 142419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230385154320