Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq809 378 1e-102 seq2264 280 3e-73 seq2403 84.2 4e-14 seq5365 82.4 1e-13 seq4859 78.8 2e-12 seq6569 73.4 7e-11 >seq809 Length=160633 Score = 378 bits (418), Expect = 1e-102 Identities = 268/304 (88%), Gaps = 10/304 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 153136 TACTAAGCTCAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 153078 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 153077 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCGA 153018 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG------- 173 ||||||||||| ||||||||||||||||||||||||||||| | | || Sbjct 153017 ATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCCTATCCCCTCGTGTGCCT 152958 Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT-GTGGTAACTTTTC-TGGCAC 231 | || | ||||||| |||||||||||||||||||| ||||||||||||| |||||| Sbjct 152957 TGGCAGTCTCAGCTTGGCCGCCACAAGCCAGTTATCCCTCGTGGTAACTTTTCTTGGCAC 152898 Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152897 CTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 152838 Query 292 TCAC 295 |||| Sbjct 152837 TCAC 152834 >seq2264 Length=278406 Score = 280 bits (310), Expect = 3e-73 Identities = 187/207 (90%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGAC-GGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || || || |||| | |||||||||||||||||||||||| Sbjct 269730 TACTAAGCAGGATTACTATCATAGCAACCGGTCTTTAGTAGGGTAAAACTAACCTGTCTC 269789 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 269790 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 269849 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 269850 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 269909 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTT 206 || ||||||||| |||||||||||||| Sbjct 269910 TGGACGCTTGGCCGCCACAAGCCAGTT 269936 Score = 158 bits (174), Expect = 2e-36 Identities = 92/94 (98%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 203 AGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 271205 AGTTAATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAAGG 271264 Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||| Sbjct 271265 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 271298 Score = 125 bits (138), Expect = 1e-26 Identities = 103/124 (83%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 245123 ACGTCGCTATGGACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 245182 Query 231 CCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||| || ||| ||| | | |||||||||||| ||||| ||||| ||| || Sbjct 245183 CCTCTTGCTGGAAACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGT 245242 Query 290 ATTC 293 |||| Sbjct 245243 ATTC 245246 Score = 125 bits (138), Expect = 1e-26 Identities = 103/124 (83%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 257824 ACGTCGCTATGGACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 257883 Query 231 CCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||| || ||| ||| | | |||||||||||| ||||| ||||| ||| || Sbjct 257884 CCTCTTGCTGGAAACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGT 257943 Query 290 ATTC 293 |||| Sbjct 257944 ATTC 257947 >seq2403 Length=69003 Score = 84.2 bits (92), Expect = 4e-14 Identities = 129/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 9196 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 9137 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 9136 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 9080 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 9079 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 9025 >seq5365 Length=1235 Score = 82.4 bits (90), Expect = 1e-13 Identities = 124/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 1204 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 1145 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| Sbjct 1144 CTTGGGACCGACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 1088 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| |||| || ||||| | |||| |||||||| | |||| ||||| Sbjct 1087 CCCGTCGATATGGACTCTTGGGGAAGATCAGCCTGTTATCCCCGGGGTACCTTTT 1033 >seq4859 Length=1423 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| |||||||||||||| ||| || ||| |||| ||||| ||||| Sbjct 1318 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 1259 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||| ||||||||| | |||| | Sbjct 1258 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGACGACATCGAGGTGCCAAACCAT 1202 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 1201 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 1147 >seq6569 Length=1015 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| || ||||| | || Sbjct 180 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 239 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||||| | | || | | ||| || ||||||||||||| | |||| | | Sbjct 240 CTTGGGACCGACTACAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 296 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||||| ||||| | | |||| |||||||| | ||| ||||| Sbjct 297 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854341277088