Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq809 378 1e-102
seq2264 280 3e-73
seq2403 84.2 4e-14
seq5365 82.4 1e-13
seq4859 78.8 2e-12
seq6569 73.4 7e-11
>seq809
Length=160633
Score = 378 bits (418), Expect = 1e-102
Identities = 268/304 (88%), Gaps = 10/304 (3%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 153136 TACTAAGCTCAATTACCATTGCGGTGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 153078
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 153077 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCGA 153018
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG------- 173
||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 153017 ATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCCTATCCCCTCGTGTGCCT 152958
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT-GTGGTAACTTTTC-TGGCAC 231
| || | ||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 152957 TGGCAGTCTCAGCTTGGCCGCCACAAGCCAGTTATCCCTCGTGGTAACTTTTCTTGGCAC 152898
Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152897 CTCTAGCCTCAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 152838
Query 292 TCAC 295
||||
Sbjct 152837 TCAC 152834
>seq2264
Length=278406
Score = 280 bits (310), Expect = 3e-73
Identities = 187/207 (90%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGAC-GGTCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||||||| | ||||| || || || |||| | ||||||||||||||||||||||||
Sbjct 269730 TACTAAGCAGGATTACTATCATAGCAACCGGTCTTTAGTAGGGTAAAACTAACCTGTCTC 269789
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 269790 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 269849
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 269850 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 269909
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTT 206
|| ||||||||| ||||||||||||||
Sbjct 269910 TGGACGCTTGGCCGCCACAAGCCAGTT 269936
Score = 158 bits (174), Expect = 2e-36
Identities = 92/94 (98%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 203 AGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 271205 AGTTAATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAAGG 271264
Query 262 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||||||||||||||||||||||||||||||||
Sbjct 271265 ATCGATAGGCCACACTTTCATGGTTTGTATTCAC 271298
Score = 125 bits (138), Expect = 1e-26
Identities = 103/124 (83%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 245123 ACGTCGCTATGGACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 245182
Query 231 CCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289
||||| || ||| ||| | | |||||||||||| ||||| ||||| ||| ||
Sbjct 245183 CCTCTTGCTGGAAACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGT 245242
Query 290 ATTC 293
||||
Sbjct 245243 ATTC 245246
Score = 125 bits (138), Expect = 1e-26
Identities = 103/124 (83%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 257824 ACGTCGCTATGGACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 257883
Query 231 CCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289
||||| || ||| ||| | | |||||||||||| ||||| ||||| ||| ||
Sbjct 257884 CCTCTTGCTGGAAACTTTACACATTCAAAAGGATCGATAAGCCACGCTTTCGCGGTCCGT 257943
Query 290 ATTC 293
||||
Sbjct 257944 ATTC 257947
>seq2403
Length=69003
Score = 84.2 bits (92), Expect = 4e-14
Identities = 129/179 (72%), Gaps = 14/179 (8%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| |||| ||||| |||||
Sbjct 9196 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 9137
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167
||| ||| | | | || | | ||| || ||||||||||||| | |||| |
Sbjct 9136 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 9080
Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224
|| ||||| |||| || ||||| || | | |||| |||||||| | |||| |||||
Sbjct 9079 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 9025
>seq5365
Length=1235
Score = 82.4 bits (90), Expect = 1e-13
Identities = 124/175 (71%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| |||| ||||| |||||
Sbjct 1204 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 1145
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||||| | | || | | ||| || ||||||||||||| | ||||
Sbjct 1144 CTTGGGACCGACTCCAGCCCC---AGGATGCGACGAGCCGACATCGAGGTGCCAAACCAT 1088
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| |||| || ||||| | |||| |||||||| | |||| |||||
Sbjct 1087 CCCGTCGATATGGACTCTTGGGGAAGATCAGCCTGTTATCCCCGGGGTACCTTTT 1033
>seq4859
Length=1423
Score = 78.8 bits (86), Expect = 2e-12
Identities = 128/179 (72%), Gaps = 14/179 (8%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| |||| ||||| |||||
Sbjct 1318 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 1259
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167
||| ||| | | | || | | ||| || ||| ||||||||| | |||| |
Sbjct 1258 CTTGGGACCTACTCCAGCCCC---AGGATGCGACGAGACGACATCGAGGTGCCAAACCAT 1202
Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224
|| ||||| |||| || ||||| || | | |||| |||||||| | |||| |||||
Sbjct 1201 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 1147
>seq6569
Length=1015
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||| ||| || ||| || ||||| | ||
Sbjct 180 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACC 239
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||||| | | || | | ||| || ||||||||||||| | |||| | |
Sbjct 240 CTTGGGACCGACTACAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 296
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 297 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854341277088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |