Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6592 291 2e-76 seq5365 215 1e-53 seq4859 197 3e-48 seq2403 188 1e-45 seq1316 188 1e-45 seq962 185 2e-44 seq6569 181 2e-43 seq1010 170 4e-40 seq949 154 3e-35 seq2682 134 3e-29 >seq6592 Length=1011 Score = 291 bits (322), Expect = 2e-76 Identities = 241/292 (83%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAAC 103 |||| ||| |||||||||| |||| | |||| ||| |||||||| || || |||| Sbjct 289 GGAGGCGCCGTTGGGATACCACCCTGATCGTATCGGAGTTCTAACCT-ACTACCGTTAAC 231 Query 104 CGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAA 163 || | ||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||| Sbjct 230 CGGTAGAGGGACCGTGTCAGGCGGACAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAA 171 Query 164 CGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAA 223 ||||||||| | ||| | |||||||| || |||||| | ||||| |||||||||||| Sbjct 170 CGGAGGCGCTCTAAGGTTCCCTCAGCGCGGTTGGAAATCGCGCGCAGAGTGCAAAGGCAT 111 Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283 | || | |||||||||| ||| |||||| |||||||||||||||||| |||| ||||| Sbjct 110 A--GGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGACTTAGTGATC 53 Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 ||| ||| | |||||||| |||| |||||| ||||||||||||||||||||| Sbjct 52 CGGTGGTACCGAATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGG 1 >seq5365 Length=1235 Score = 215 bits (238), Expect = 1e-53 Identities = 185/229 (81%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||||| | ||| ||||| ||||||||||| |||||| |||||||||||||||| Sbjct 823 GGGACAGTGTCTGATGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGC 882 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 |||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| | Sbjct 883 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAG 942 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| || ||| | ||| ||||||||||||||||||| || |||||||||||| Sbjct 943 CTTGACTGTGAGACCGACGGGTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGT 1002 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| |||||||||| ||||||||||| ||||| ||||||| Sbjct 1003 GGCTTGTGGAAGCGCCGTCGCTCAACGGATAAAAGGTACCCCGGGGATA 1051 >seq4859 Length=1423 Score = 197 bits (218), Expect = 3e-48 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | | ||| ||||| ||||||||||| |||||| ||| |||||||||||| Sbjct 937 GGGACAGTGCCTGATGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGC 996 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 |||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| | Sbjct 997 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAG 1056 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| || | || || ||||||||||||||||||| || |||||||||||| Sbjct 1057 CTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGT 1116 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| ||||||||||| ||||||||||| |||| ||||||| Sbjct 1117 ACATTGTGGAATGGCCGTCGCTCAACGGATAAAAGGTACCTCGGGGATA 1165 >seq2403 Length=69003 Score = 188 bits (208), Expect = 1e-45 Identities = 170/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||| | |||| Sbjct 8830 GGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGCGCCCAAAGGTTCCCT 8889 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| ||| ||| || || | | |||| || ||| ||||| | ||||||| || | Sbjct 8890 CAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAGCTTGACTGTGAGAGA 8949 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 || || ||||||||||||||||||| || |||||||||||| | ||||| ||| Sbjct 8950 GACATCTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGTACATTGTGGAATGGC 9009 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||| ||||||||||| |||| ||||||| Sbjct 9010 CGTCGCTCAACGGATAAAAGGTACCTCGGGGATA 9043 >seq1316 Length=3583 Score = 188 bits (208), Expect = 1e-45 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| ||||| |||| |||||||||| Sbjct 2885 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGA 2944 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||| | | ||| | ||||||| |||| ||| ||| Sbjct 2945 GTTCGAAGGTACGCTAGGTACGGTCGGACATCGTGCTAATAGTGCAATGGCATAAGCGTG 3004 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| ||| |||||| |||||| |||||||| || | || |||||||| ||| Sbjct 3005 CTTAACTGCGAGACCGACAAGTCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGGT 3064 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 3065 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 3113 >seq962 Length=5977 Score = 185 bits (204), Expect = 2e-44 Identities = 209/276 (76%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 66 CCCTGTTGTATTG-GATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGT 124 ||||||||| || ||| ||||||| | ||| || ||| || ||||| | | | Sbjct 1280 CCCTGTTGTTTTCTGATGTCTAACCACGCACCGT-TATCCGGTGCTGGGACCCTCTGTGG 1222 Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| |||||||||||||||||||||||| |||||||||||||||||| | ||| | | Sbjct 1221 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGAAGGTTGGC 1162 Query 185 TCAGCTTGGATGGAAACCATGCGC-ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 |||| || |||||||| | | ||||||| |||| ||| | ||||||||| | Sbjct 1161 TCAGGCCGGTTGGAAACCGGCTGTTAGAGTGCAATGGCATAAGCCAGCCTGACTGCGAGA 1102 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | |||||| ||||| |||||||||||| | || |||||||| ||| | ||||| | Sbjct 1101 CTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCTCGTGGAAGG 1042 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| ||||||||||| ||| | ||||||| Sbjct 1041 GCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 1006 >seq6569 Length=1015 Score = 181 bits (200), Expect = 2e-43 Identities = 180/231 (78%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct 561 GGGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA 502 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG--CAAAGGCAAAAGGG 228 || | ||| ||| |||||| || ||| | | |||||| ||| |||||||| ||| | Sbjct 501 GCTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCG 444 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||||| | | | | || |||||| | |||| | || |||| |||||||| | Sbjct 443 TGCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTG 384 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 383 GTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 333 >seq1010 Length=5412 Score = 170 bits (188), Expect = 4e-40 Identities = 215/294 (73%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89 |||||||| | |||||| ||| |||| |||| | | | ||||| ||||||| Sbjct 293 ACGCCAGTTCTTGTGGAGCCATCCTTGAAATACCACCCTTATCTTCGTGGATGTCTAACC 234 Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149 | ||| || ||| ||||||||||| | ||| |||||||||||||||||||| Sbjct 233 GCGGTCCGT-TATCCGGATCCGGGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGC 175 Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209 |||| |||||||||||||||||| | | | | ||||| || ||||| | || Sbjct 174 CTCCGAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGACCGGTCGGAAATCGGTCGTC 115 Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 ||||||| |||| ||| | ||||||||| || |||||| ||||| ||||||||| Sbjct 114 GAGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGT 55 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||| | || |||||||| ||| | | ||||| |||| |||||| ||||||||| Sbjct 54 CGGTCATAGTGATCCGGTGGTCCCGTGTGGAAGGGCCATCGCTCAACGGATAAA 1 >seq949 Length=6172 Score = 154 bits (170), Expect = 3e-35 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 900 GGACATTGTTTGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 841 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || |||| | ||| |||| | | ||||||| ||| ||| || Sbjct 840 TTCAAAGGTAAGCTCAATACGCTTGGTAACCGTATGAGGAGTGCAATAGCATAAGCTTGC 781 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| || || |||||| | ||||| |||||| ||| || |||||||| ||| Sbjct 780 TTGACTGTGAGACATACAAGTCGATCAGGGTCGAAAGACGGATATAGTGATCCGGTGGTT 721 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| | ||||||||| ||| ||||||||| Sbjct 720 CTGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCTGGGGATA 673 >seq2682 Length=265177 Score = 134 bits (148), Expect = 3e-29 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||| ||||||||||| |||||| | || Sbjct 13297 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGTGTAACGGAGGCTTCCAAAGGTCTGCT 13238 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 || | | ||| |||| || | ||||||| | | ||| | |||||||||| ||| Sbjct 13237 CAACACGCTTGGTAACCGTGTGTGGAGTGCAATAGTACAAGCAGGCTTGACTGCGAGACC 13178 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | ||| |||||| |||| ||| || |||||||| ||| ||| |||||| ||| Sbjct 13177 GACGGGTCGAGCAGGTGGGAAACCAGGGTATAGTGATCCGGTGGTTCTGTATGGAAGGGC 13118 Query 306 CGTCGCTCGACGGATAAAAGCTAC 329 | |||||| | ||||||||| ||| Sbjct 13117 CATCGCTCAAAGGATAAAAGGTAC 13094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982332479648