Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq6592 291 2e-76
seq5365 215 1e-53
seq4859 197 3e-48
seq2403 188 1e-45
seq1316 188 1e-45
seq962 185 2e-44
seq6569 181 2e-43
seq1010 170 4e-40
seq949 154 3e-35
seq2682 134 3e-29
>seq6592
Length=1011
Score = 291 bits (322), Expect = 2e-76
Identities = 241/292 (83%), Gaps = 3/292 (1%)
Strand=Plus/Minus
Query 44 GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACCGGACGACGTATAAC 103
|||| ||| |||||||||| |||| | |||| ||| |||||||| || || ||||
Sbjct 289 GGAGGCGCCGTTGGGATACCACCCTGATCGTATCGGAGTTCTAACCT-ACTACCGTTAAC 231
Query 104 CGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAA 163
|| | ||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 230 CGGTAGAGGGACCGTGTCAGGCGGACAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAA 171
Query 164 CGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAA 223
||||||||| | ||| | |||||||| || |||||| | ||||| ||||||||||||
Sbjct 170 CGGAGGCGCTCTAAGGTTCCCTCAGCGCGGTTGGAAATCGCGCGCAGAGTGCAAAGGCAT 111
Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283
| || | |||||||||| ||| |||||| |||||||||||||||||| |||| |||||
Sbjct 110 A--GGAGCTTGACTGCGAGACCTACAAGTCGAGCAGGGACGAAAGTCGGACTTAGTGATC 53
Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335
||| ||| | |||||||| |||| |||||| |||||||||||||||||||||
Sbjct 52 CGGTGGTACCGAATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGG 1
>seq5365
Length=1235
Score = 215 bits (238), Expect = 1e-53
Identities = 185/229 (81%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
||||||||||| | ||| ||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 823 GGGACAGTGTCTGATGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGC 882
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
|||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| |
Sbjct 883 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAG 942
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
||||||| || ||| | ||| ||||||||||||||||||| || ||||||||||||
Sbjct 943 CTTGACTGTGAGACCGACGGGTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGT 1002
Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||||| |||||||||| ||||||||||| ||||| |||||||
Sbjct 1003 GGCTTGTGGAAGCGCCGTCGCTCAACGGATAAAAGGTACCCCGGGGATA 1051
>seq4859
Length=1423
Score = 197 bits (218), Expect = 3e-48
Identities = 181/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
||||||||| | | ||| ||||| ||||||||||| |||||| ||| ||||||||||||
Sbjct 937 GGGACAGTGCCTGATGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGC 996
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
|||||||| | |||||||| ||| ||| || || | | |||| || ||| ||||| |
Sbjct 997 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAG 1056
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
||||||| || | || || ||||||||||||||||||| || ||||||||||||
Sbjct 1057 CTTGACTGTGAGAGAGACATCTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGT 1116
Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||||| ||||||||||| ||||||||||| |||| |||||||
Sbjct 1117 ACATTGTGGAATGGCCGTCGCTCAACGGATAAAAGGTACCTCGGGGATA 1165
>seq2403
Length=69003
Score = 188 bits (208), Expect = 1e-45
Identities = 170/214 (79%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||| | ||||
Sbjct 8830 GGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAAAGTAACGGAGGCGCCCAAAGGTTCCCT 8889
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|||| ||| ||| || || | | |||| || ||| ||||| | ||||||| || |
Sbjct 8890 CAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAGCTTGACTGTGAGAGA 8949
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
|| || ||||||||||||||||||| || |||||||||||| | ||||| |||
Sbjct 8950 GACATCTCGAGCAGGGACGAAAGTCGGGACTAGTGATCCGGCGGTACATTGTGGAATGGC 9009
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||||| ||||||||||| |||| |||||||
Sbjct 9010 CGTCGCTCAACGGATAAAAGGTACCTCGGGGATA 9043
>seq1316
Length=3583
Score = 188 bits (208), Expect = 1e-45
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
||||||||| | ||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 2885 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGA 2944
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
| | ||| ||| || | || ||| | | ||| | ||||||| |||| ||| |||
Sbjct 2945 GTTCGAAGGTACGCTAGGTACGGTCGGACATCGTGCTAATAGTGCAATGGCATAAGCGTG 3004
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
|| ||||||| ||| |||||| |||||| |||||||| || | || |||||||| |||
Sbjct 3005 CTTAACTGCGAGACCGACAAGTCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGGT 3064
Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| |||||| |||| |||||| ||||||||||| ||| |||||||||
Sbjct 3065 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 3113
>seq962
Length=5977
Score = 185 bits (204), Expect = 2e-44
Identities = 209/276 (76%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 66 CCCTGTTGTATTG-GATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGT 124
||||||||| || ||| ||||||| | ||| || ||| || ||||| | | |
Sbjct 1280 CCCTGTTGTTTTCTGATGTCTAACCACGCACCGT-TATCCGGTGCTGGGACCCTCTGTGG 1222
Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184
|||| |||||||||||||||||||||||| |||||||||||||||||| | ||| | |
Sbjct 1221 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGAAGGTTGGC 1162
Query 185 TCAGCTTGGATGGAAACCATGCGC-ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243
|||| || |||||||| | | ||||||| |||| ||| | ||||||||| |
Sbjct 1161 TCAGGCCGGTTGGAAACCGGCTGTTAGAGTGCAATGGCATAAGCCAGCCTGACTGCGAGA 1102
Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303
| |||||| ||||| |||||||||||| | || |||||||| ||| | ||||| |
Sbjct 1101 CTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCTCGTGGAAGG 1042
Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| |||||| ||||||||||| ||| | |||||||
Sbjct 1041 GCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 1006
>seq6569
Length=1015
Score = 181 bits (200), Expect = 2e-43
Identities = 180/231 (78%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
||||| |||| | ||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 561 GGGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA 502
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG--CAAAGGCAAAAGGG 228
|| | ||| ||| |||||| || ||| | | |||||| ||| |||||||| ||| |
Sbjct 501 GCTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCG 444
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||||| | | | | || |||||| | |||| | || |||| |||||||| |
Sbjct 443 TGCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTG 384
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| ||| |||||| |||| |||||| ||||||||||| ||| | |||||||
Sbjct 383 GTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 333
>seq1010
Length=5412
Score = 170 bits (188), Expect = 4e-40
Identities = 215/294 (73%), Gaps = 1/294 (0%)
Strand=Plus/Minus
Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAACC 89
|||||||| | |||||| ||| |||| |||| | | | ||||| |||||||
Sbjct 293 ACGCCAGTTCTTGTGGAGCCATCCTTGAAATACCACCCTTATCTTCGTGGATGTCTAACC 234
Query 90 GGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGC 149
| ||| || ||| ||||||||||| | ||| ||||||||||||||||||||
Sbjct 233 GCGGTCCGT-TATCCGGATCCGGGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGC 175
Query 150 CTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCA 209
|||| |||||||||||||||||| | | | | ||||| || ||||| | ||
Sbjct 174 CTCCGAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGACCGGTCGGAAATCGGTCGTC 115
Query 210 CAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269
||||||| |||| ||| | ||||||||| || |||||| ||||| |||||||||
Sbjct 114 GAGTGCAATGGCATAAGCCCGCCTGACTGCGAGACTGACAAGTCGAGCAGAGACGAAAGT 55
Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323
||| | || |||||||| ||| | | ||||| |||| |||||| |||||||||
Sbjct 54 CGGTCATAGTGATCCGGTGGTCCCGTGTGGAAGGGCCATCGCTCAACGGATAAA 1
>seq949
Length=6172
Score = 154 bits (170), Expect = 3e-35
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||| ||| | ||| ||||||||||||| |||||||||| ||| |||||||||||
Sbjct 900 GGACATTGTTTGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 841
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
||||| || |||| | ||| |||| | | ||||||| ||| ||| ||
Sbjct 840 TTCAAAGGTAAGCTCAATACGCTTGGTAACCGTATGAGGAGTGCAATAGCATAAGCTTGC 781
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
||||||| || || |||||| | ||||| |||||| ||| || |||||||| |||
Sbjct 780 TTGACTGTGAGACATACAAGTCGATCAGGGTCGAAAGACGGATATAGTGATCCGGTGGTT 721
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| |||||| |||| |||||| | ||||||||| ||| |||||||||
Sbjct 720 CTGCATGGAAGGGCCATCGCTCAAAGGATAAAAGGTACGCTGGGGATA 673
>seq2682
Length=265177
Score = 134 bits (148), Expect = 3e-29
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||||||||||| |||||||||| |||| ||||||||||| |||||| | ||
Sbjct 13297 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGTGTAACGGAGGCTTCCAAAGGTCTGCT 13238
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|| | | ||| |||| || | ||||||| | | ||| | |||||||||| |||
Sbjct 13237 CAACACGCTTGGTAACCGTGTGTGGAGTGCAATAGTACAAGCAGGCTTGACTGCGAGACC 13178
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
| ||| |||||| |||| ||| || |||||||| ||| ||| |||||| |||
Sbjct 13177 GACGGGTCGAGCAGGTGGGAAACCAGGGTATAGTGATCCGGTGGTTCTGTATGGAAGGGC 13118
Query 306 CGTCGCTCGACGGATAAAAGCTAC 329
| |||||| | ||||||||| |||
Sbjct 13117 CATCGCTCAAAGGATAAAAGGTAC 13094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982332479648
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