Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq2682 196 5e-48 seq962 143 3e-32 seq5356 141 1e-31 seq6569 138 1e-30 seq1010 134 2e-29 seq4859 131 2e-28 seq5365 122 1e-25 seq1316 118 1e-24 seq6592 105 7e-21 seq1613 102 9e-20 >seq2682 Length=265177 Score = 196 bits (216), Expect = 5e-48 Identities = 146/180 (81%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||||| | |||||||| |||||||||||||| |||||||||||||| | Sbjct 13459 CGGGGTCTTTCCGTCCCGTGGCGGGTAAGCGGCATCTTCACCGCTACTACAATTTCACCG 13518 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 13519 AGCTCACGGCCGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCC 13578 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 13579 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 13638 >seq962 Length=5977 Score = 143 bits (158), Expect = 3e-32 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||||||| || |||||||||| || | | ||||||| ||| Sbjct 1390 CGGGGTCTTTCCGTCTAACCGCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCGCTG 1449 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | ||||||| ||| |||||||||||||||||||||||||| Sbjct 1450 AGCATGTCCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1509 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1510 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1540 >seq5356 Length=1236 Score = 141 bits (156), Expect = 1e-31 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 62 CGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 121 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| |||||||||||||||||||||||||||||| Sbjct 122 AGTCTATGTTGGAGACAGCGGGGAAGTCGTTACACCATTCGTGCAGGTCGGAACTTACCC 181 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 182 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 241 >seq6569 Length=1015 Score = 138 bits (152), Expect = 1e-30 Identities = 121/152 (80%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||| | | |||||||||| | | | ||||||||||| Sbjct 716 CGGGGTCTTTCCGTCTTGCCGCGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTG 775 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 776 AG-TCTCGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 834 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 835 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 866 >seq1010 Length=5412 Score = 134 bits (148), Expect = 2e-29 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 368 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 427 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 428 AGTCTATGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 487 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 488 GACAAGGAATTTCGCTACCTTAGGACCGTTA 518 >seq4859 Length=1423 Score = 131 bits (144), Expect = 2e-28 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || |||| ||||||| | | Sbjct 783 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGCCG 724 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 723 AGTTTATGGTTGAGACAGCGGGGAAGTCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 664 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 663 GACAAGGAATTTCGCTACCTTAGGATGGTTA 633 >seq5365 Length=1235 Score = 122 bits (134), Expect = 1e-25 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| | || ||||||| || || | ||||||||| | Sbjct 669 CGGGGTCTTTCCGTCCTGCTGCGCGAAACGAGCATCTTTACTCGTAGTGCAATTTCACCG 610 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 609 GGCCTATGGTTGAGACAGTCGAGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 550 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 549 GACAAGGAATTTCGCTACCTTAGGATGGTTA 519 >seq1316 Length=3583 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||| ||||| |||| | | | ||| ||| |||| Sbjct 2729 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGA 2670 Query 84 GCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || ||| | |||||| ||| |||||||||||||||||||||||||| Sbjct 2669 G-TCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 2611 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 2610 GACAAGGAATTTCGCTACCTTAGGACCGTTA 2580 >seq6592 Length=1011 Score = 105 bits (116), Expect = 7e-21 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG- 82 ||||||||| |||| | |||||||||| | |||||||||| | ||||| |||||||| | Sbjct 379 GGGGTCTTTCCGTCACGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGG 438 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNT-ACACCATT-CGT-GCAGGTCGGAACTTA 139 | ||| || ||||||||| | || ||||| ||| || |||| ||| ||| Sbjct 439 ATCTCTCG-TTGAGACAGCCGCCCAAGTCGTTACGCCATTACGTCGCGGGTCAGAATTTA 497 Query 140 CCCGACAAGG-AATTTCG-CTACCTTAGG-ACCGTTANNNNNNNNNNNNNNGTTTACTGG 196 || ||||||| ||||||| |||||||||| ||||||| ||||||||| Sbjct 498 CCTGACAAGGGAATTTCGTCTACCTTAGGGACCGTTATAGTTACGGCCGCCGTTTACTGG 557 Query 197 GGCTTC 202 |||||| Sbjct 558 GGCTTC 563 >seq1613 Length=112029 Score = 102 bits (112), Expect = 9e-20 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 40 ATCGCGGGTAAT--CGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGA 97 || |||||||| ||| |||||||||| ||||| ||||||||||||| || ||||| | Sbjct 54824 ATTGCGGGTAAAACCGGTATCTTCACCGGTACTAAGATTTCACTGAGCTTACAGTTGAAA 54765 Query 98 CAGNNNNNNNNNNNNT----ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 153 ||| | || || ||| ||| |||| ||||||| | ||||||||||| Sbjct 54764 CAGTGCATGCACGAATCGTTACGCCTTTCATGCGGGTCAGAACTTAGCTGACAAGGAATT 54705 Query 154 TCGCTACCTTAGGACCGTTA 173 |||||||||| ||||||||| Sbjct 54704 TCGCTACCTTTGGACCGTTA 54685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547163566227