Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq6190 578 8e-163
seq6661 311 2e-82
seq962 275 1e-71
seq1010 260 3e-67
seq6110 257 4e-66
seq2403 219 9e-55
seq1489 199 8e-49
seq949 196 1e-47
seq2682 174 3e-41
seq2882 84.2 5e-14
>seq6190
Length=1069
Score = 578 bits (640), Expect = 8e-163
Identities = 350/367 (95%), Gaps = 2/367 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 85 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 142
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 202
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 262
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 322
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||
Sbjct 323 TCTCCCGTAGGACGTATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACCAG 382
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360
||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 383 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCCAGGAGCAAGCTCCTCTCAT 442
Query 361 CCGCTCG 367
|||||||
Sbjct 443 CCGCTCG 449
>seq6661
Length=1004
Score = 311 bits (344), Expect = 2e-82
Identities = 272/336 (81%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||| |||||
Sbjct 104 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGCATTG-CTGGATCAGGCTTGCGCCC 161
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 221
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| || |||||||||||||| ||| ||||| |||||||| ||| ||||| ||
Sbjct 222 TGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCCTTTACCCCA 281
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|||||||||||||| || | ||| || ||| ||| | | ||||| |||
Sbjct 282 CCAACTAGCTAATCAGATATCGGCCGCTCCAGGAGCATGAGGTCTTGCGATCCCCCACTT 341
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|| || ||| |||||||||||||||||| |||| ||||||||||||||| |
Sbjct 342 TCATCCTTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCTTGG 401
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
| | |||| | ||||||||||||| |||| |||
Sbjct 402 GTACGTTCCGATATATTACTCACCCGTTCGCCACTC 437
>seq962
Length=5977
Score = 275 bits (304), Expect = 1e-71
Identities = 265/336 (79%), Gaps = 18/336 (5%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 4874 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 4931
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 4932 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 4991
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 4992 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 5051
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|||||||||||||| ||| ||| |||| ||| | || |||
Sbjct 5052 CCAACTAGCTAATCAGACGCGGGCCAATCTTTCGGCGATA------AA--------TCTT 5097
Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
|| ||||| ||| | ||| |||||||||| |||||| ||| | || || | |
Sbjct 5098 TC-CCCGTAAGGGCTTATCCGGTATTAGCACAAGTTTCCCTGTGTTGTTCCGAACCAAAA 5156
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| | |||| | || ||||||||||||| ||||||
Sbjct 5157 GGTATGTTCCCACGCGTTACTCACCCGTCTGCCGCT 5192
>seq1010
Length=5412
Score = 260 bits (288), Expect = 3e-67
Identities = 178/198 (90%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| |||||
Sbjct 5210 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 5267
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 5268 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 5327
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| ||
Sbjct 5328 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 5387
Query 181 CCAACTAGCTAATCCGAC 198
||||||||||||||| ||
Sbjct 5388 CCAACTAGCTAATCCAAC 5405
>seq6110
Length=1082
Score = 257 bits (284), Expect = 4e-66
Identities = 258/334 (77%), Gaps = 16/334 (5%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|||||||||| ||||||||| | || |||||||||| ||||| |||||||||||||||
Sbjct 401 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 458
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| ||| |||||| ||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 459 TTGCGCAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 518
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||
Sbjct 519 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTAGCCTTGGTGAGCCTTTACCTCAC 578
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
||||||||||||| ||| ||| || || ||| | || ||||
Sbjct 579 CAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AA--------TCTTT 624
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| |||| ||| | || |||||||||| |||||| ||| | || || | ||
Sbjct 625 CCCCCGAAGGGCACATCCGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGAACCAAAGGG 684
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| |||| | | ||||||||||||||||| ||
Sbjct 685 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 718
>seq2403
Length=69003
Score = 219 bits (242), Expect = 9e-55
Identities = 175/208 (84%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| || || | | | |||||||| | | ||| ||||||||||||||||
Sbjct 3013 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 2956
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2955 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 2896
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| | | || |||||||| || | ||| ||||||||||||||||||||||||||||
Sbjct 2895 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 2836
Query 182 CAACTAGCTAATCCGACCTAGGCTCATC 209
|||| |||| || | | ||||||||
Sbjct 2835 CAACAAGCTGATAGGCCGCGGGCTCATC 2808
>seq1489
Length=2939
Score = 199 bits (220), Expect = 8e-49
Identities = 161/192 (84%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| || || | | | |||||||| | | ||| ||||||||| ||||||
Sbjct 209 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTCCGCCCA 152
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 151 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 92
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| | | || |||||||| || | ||| ||||||||||||| ||||||||| |||
Sbjct 91 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCAC 32
Query 182 CAACTAGCTAAT 193
|||| |||| ||
Sbjct 31 CAACAAGCTGAT 20
>seq949
Length=6172
Score = 196 bits (216), Expect = 1e-47
Identities = 171/209 (82%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||| || |||| ||||||| | |||||||||| |||||| |||| ||| | ||
Sbjct 5897 TTTACAACCCAGAAGGCCTTCTTCCTG-CACGCGGCAT-GGCTGGTTCAGACTTGCATCC 5954
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 5955 ATTGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 6014
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||| |||||||| | ||| |||| ||||||||||| ||||||| ||
Sbjct 6015 TGTGGGGGATCAACCTCTCAGTTCCCCTACTGATCATCGCCTTGGTGGTCCATTACACCA 6074
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209
|||||||||||||| || | |||||||
Sbjct 6075 CCAACTAGCTAATCAGAAGCATGCTCATC 6103
>seq2682
Length=265177
Score = 174 bits (192), Expect = 3e-41
Identities = 167/210 (80%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||| || || | ||||| | | |||||||||| |||||| |||| ||| | ||
Sbjct 16592 TTTACAACCCTGAGGGCCTTCATCCGG-CACGCGGCAT-GGCTGGGTCAGACTTGCATCC 16649
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| ||||||||||| |||||||||||||||||||||| || |||| ||||||| || |
Sbjct 16650 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCGGGCCCGTATCTCAGTGCCCG 16709
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||| |||||||| | || |||||||||||||||| ||| ||||| |
Sbjct 16710 TGTGGGGGATCAACCTCTCAGCTCCCCTATCGATCGTCGCCTTGGTGGGCCGTTACCCCG 16769
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210
|||||||||||||| || | || |||||
Sbjct 16770 CCAACTAGCTAATCGAACGCATGCCCATCT 16799
>seq2882
Length=47691
Score = 84.2 bits (92), Expect = 5e-14
Identities = 84/105 (80%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||||||| |||||||| | | |||| | || | || | ||||| |||| ||||
Sbjct 44537 TTTACAATCCGCAGACCTTCATCCTT-CACGTAGTATCG-CTCGTTCAGGGTTTCCCCCA 44594
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|| | |||||||||||||||||||||||| |||||| ||||||
Sbjct 44595 TTA-CGAATATTCCCCACTGCTGCCTCCCGAAGGAGTAGGGACCG 44638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071926321440
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