Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6190 578 8e-163 seq6661 311 2e-82 seq962 275 1e-71 seq1010 260 3e-67 seq6110 257 4e-66 seq2403 219 9e-55 seq1489 199 8e-49 seq949 196 1e-47 seq2682 174 3e-41 seq2882 84.2 5e-14 >seq6190 Length=1069 Score = 578 bits (640), Expect = 8e-163 Identities = 350/367 (95%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 85 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 142 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 202 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 262 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 322 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||| Sbjct 323 TCTCCCGTAGGACGTATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACCAG 382 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 ||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 383 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCCAGGAGCAAGCTCCTCTCAT 442 Query 361 CCGCTCG 367 ||||||| Sbjct 443 CCGCTCG 449 >seq6661 Length=1004 Score = 311 bits (344), Expect = 2e-82 Identities = 272/336 (81%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||| ||||| Sbjct 104 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGCATTG-CTGGATCAGGCTTGCGCCC 161 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 221 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||||||||| ||| ||||| |||||||| ||| ||||| || Sbjct 222 TGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCCTTTACCCCA 281 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| || | ||| || ||| ||| | | ||||| ||| Sbjct 282 CCAACTAGCTAATCAGATATCGGCCGCTCCAGGAGCATGAGGTCTTGCGATCCCCCACTT 341 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || || ||| |||||||||||||||||| |||| ||||||||||||||| | Sbjct 342 TCATCCTTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCTTGG 401 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | | |||| | ||||||||||||| |||| ||| Sbjct 402 GTACGTTCCGATATATTACTCACCCGTTCGCCACTC 437 >seq962 Length=5977 Score = 275 bits (304), Expect = 1e-71 Identities = 265/336 (79%), Gaps = 18/336 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 4874 CTTTACAACCCTAGGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 4931 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 4932 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 4991 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 4992 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCA 5051 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| ||| | || ||| Sbjct 5052 CCAACTAGCTAATCAGACGCGGGCCAATCTTTCGGCGATA------AA--------TCTT 5097 Query 241 TCTCCCGT-AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || ||||| ||| | ||| |||||||||| |||||| ||| | || || | | Sbjct 5098 TC-CCCGTAAGGGCTTATCCGGTATTAGCACAAGTTTCCCTGTGTTGTTCCGAACCAAAA 5156 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || | |||| | || ||||||||||||| |||||| Sbjct 5157 GGTATGTTCCCACGCGTTACTCACCCGTCTGCCGCT 5192 >seq1010 Length=5412 Score = 260 bits (288), Expect = 3e-67 Identities = 178/198 (90%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 5210 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 5267 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 5268 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 5327 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||| ||||| || Sbjct 5328 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCA 5387 Query 181 CCAACTAGCTAATCCGAC 198 ||||||||||||||| || Sbjct 5388 CCAACTAGCTAATCCAAC 5405 >seq6110 Length=1082 Score = 257 bits (284), Expect = 4e-66 Identities = 258/334 (77%), Gaps = 16/334 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| ||||||||| | || |||||||||| ||||| ||||||||||||||| Sbjct 401 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 458 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| |||||| ||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 459 TTGCGCAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 518 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||| Sbjct 519 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTAGCCTTGGTGAGCCTTTACCTCAC 578 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| ||| || || ||| | || |||| Sbjct 579 CAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AA--------TCTTT 624 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| |||||| ||| | || || | || Sbjct 625 CCCCCGAAGGGCACATCCGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGAACCAAAGGG 684 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | | ||||||||||||||||| || Sbjct 685 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 718 >seq2403 Length=69003 Score = 219 bits (242), Expect = 9e-55 Identities = 175/208 (84%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| |||||||||||||||| Sbjct 3013 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 2956 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 2955 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 2896 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | || |||||||| || | ||| |||||||||||||||||||||||||||| Sbjct 2895 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 2836 Query 182 CAACTAGCTAATCCGACCTAGGCTCATC 209 |||| |||| || | | |||||||| Sbjct 2835 CAACAAGCTGATAGGCCGCGGGCTCATC 2808 >seq1489 Length=2939 Score = 199 bits (220), Expect = 8e-49 Identities = 161/192 (84%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| | | ||| ||||||||| |||||| Sbjct 209 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTCG-CTGCATCAGGCTTCCGCCCA 152 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 151 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 92 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | || |||||||| || | ||| ||||||||||||| ||||||||| ||| Sbjct 91 GTGGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCAC 32 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 31 CAACAAGCTGAT 20 >seq949 Length=6172 Score = 196 bits (216), Expect = 1e-47 Identities = 171/209 (82%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || |||| ||||||| | |||||||||| |||||| |||| ||| | || Sbjct 5897 TTTACAACCCAGAAGGCCTTCTTCCTG-CACGCGGCAT-GGCTGGTTCAGACTTGCATCC 5954 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 5955 ATTGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 6014 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||| |||||||| | ||| |||| ||||||||||| ||||||| || Sbjct 6015 TGTGGGGGATCAACCTCTCAGTTCCCCTACTGATCATCGCCTTGGTGGTCCATTACACCA 6074 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||||||||||| || | ||||||| Sbjct 6075 CCAACTAGCTAATCAGAAGCATGCTCATC 6103 >seq2682 Length=265177 Score = 174 bits (192), Expect = 3e-41 Identities = 167/210 (80%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || || | ||||| | | |||||||||| |||||| |||| ||| | || Sbjct 16592 TTTACAACCCTGAGGGCCTTCATCCGG-CACGCGGCAT-GGCTGGGTCAGACTTGCATCC 16649 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| |||||||||||||||||||||| || |||| ||||||| || | Sbjct 16650 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCGGGCCCGTATCTCAGTGCCCG 16709 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||| |||||||| | || |||||||||||||||| ||| ||||| | Sbjct 16710 TGTGGGGGATCAACCTCTCAGCTCCCCTATCGATCGTCGCCTTGGTGGGCCGTTACCCCG 16769 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||||||||| || | || ||||| Sbjct 16770 CCAACTAGCTAATCGAACGCATGCCCATCT 16799 >seq2882 Length=47691 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||| |||||||| | | |||| | || | || | ||||| |||| |||| Sbjct 44537 TTTACAATCCGCAGACCTTCATCCTT-CACGTAGTATCG-CTCGTTCAGGGTTTCCCCCA 44594 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 || | |||||||||||||||||||||||| |||||| |||||| Sbjct 44595 TTA-CGAATATTCCCCACTGCTGCCTCCCGAAGGAGTAGGGACCG 44638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071926321440