Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1316 407 4e-111 seq949 257 4e-66 seq962 251 2e-64 seq2403 224 2e-56 seq2677 208 2e-51 seq2682 205 2e-50 seq1010 152 1e-34 seq1092 122 2e-25 seq1489 96.9 9e-18 >seq1316 Length=3583 Score = 407 bits (450), Expect = 4e-111 Identities = 349/417 (84%), Gaps = 16/417 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| Sbjct 1340 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 1283 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 1282 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 1228 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| |||||||| | |||||| ||| | ||||| || |||||||||||||| Sbjct 1227 CCAGCGACTGAACGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAAC 1169 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA--C 241 ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 1168 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCGTTTC 1110 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | |||||| |||| ||||| |||| |||||||||||||||||||||||||||| || Sbjct 1109 CA----GGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CC 1055 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||| Sbjct 1054 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTT 995 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| Sbjct 994 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCTCGTGTCCCGCCCTACT 938 >seq949 Length=6172 Score = 257 bits (284), Expect = 4e-66 Identities = 286/365 (78%), Gaps = 19/365 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 3133 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 3189 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| ||||||| |||| || |||||| | ||||| || ||||| |||| Sbjct 3190 ACCGCACCTT-CAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCCCCT- 3245 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC---CT-ATTCGGTTAAGC 184 ||||| |||||||| | ||||||||||| |||| || ||| || | | |||| | Sbjct 3246 GACTATACGCCCTATTCAGACTCGCTTT-CGCTTCGGATCCGTGTCTGAAACACTTAACC 3304 Query 185 TTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || |||| ||| | ||| ||| | | |||||| ||||||| |||| ||||| | || Sbjct 3305 TT-GCCAGAGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACGCCACC- 3362 Query 244 AGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 ||| ||||| || ||||||| ||| || |||||||| |||||||||||||||| | | Sbjct 3363 --TGGACGCTCCGACCGCTTGTAAGCACACAGTTTCAGGTTCTATTTCACTCCCCTGTTC 3420 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||||| |||| |||||||||||||||||| |||||||||||||| |||| ||||||| Sbjct 3421 GGGGTTCGTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTT 3480 Query 362 AGCCT 366 ||||| Sbjct 3481 AGCCT 3485 >seq962 Length=5977 Score = 251 bits (278), Expect = 2e-64 Identities = 230/285 (81%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCT--CCCCTATTCGGTTAAGCTTTGCCACTG 194 |||||| | ||||||||||| |||| |||| | |||| | |||||||| || | | Sbjct 2726 GCCCTATTCAGACTCGCTTT-CGCTGCGCCCTACACCTACCGGCTTAAGCTT-GCTAGTT 2783 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254 | | ||||||| |||||||||||||||| ||||||| ||||||| | ||||||| Sbjct 2784 ACACTAAGTCGTTGACCCATTATACAAA-GGTACGCCGTCACCCTT----GCGGGCTCCG 2838 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||| ||||| |||| |||||||||| ||||||||||||||||| |||||| |||||| Sbjct 2839 ACTGTTTGTAGGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCGTCGGGGTGCTTTTCA 2898 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| |||| |||||||||| || |||| |||| ||||||| | Sbjct 2899 CCTTTCCCTCACGGTACTTGTTCGCTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGT 2958 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| |||||| |||||||| |||| ||||| ||| ||||||| Sbjct 2959 GGTCTCCCCATGTTCAGACAGGATTTCACGTGCCCCGCCCTACTC 3003 >seq2403 Length=69003 Score = 224 bits (248), Expect = 2e-56 Identities = 288/384 (75%), Gaps = 15/384 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | | |||||||| | || ||||||| |||||| || || Sbjct 7510 CCACAGCTCATCCCCC--AGGTTTTCAACCCTGGTGGGTTCGGGCCTCCACGCGGTC-TT 7454 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| ||| || |||| |||| || |||||| | | | || |||||||| | | || Sbjct 7453 ACCCGCGCTT-CACCCTGGCCAT-GGCTAGATCACACCGCTT-CGGGTCTAGACCAC-GC 7398 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187 |||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | | | | Sbjct 7397 GACTCAAGCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTC 7339 Query 188 GCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||| | | ||| |||| | | |||| | ||||||| |||| ||||||| || Sbjct 7338 GCCACGTAGCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCCCTAAA--- 7282 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 |||||| || | ||||| ||| ||||||||||| |||||||||||||||| ||||||| Sbjct 7281 -GGCTCCGACGGATTGTAGGCACACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGT 7224 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 |||||| |||||||||||||||||||| | |||||||||| | ||||||||| || Sbjct 7223 ACTTTTCATCTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTTAGGCT 7164 Query 367 TGGAGGATGGTCCCCCCATATTCA 390 | | || ||||||| ||| ||||| Sbjct 7163 TAGCGGGTGGTCCCGCCAGATTCA 7140 Score = 199 bits (220), Expect = 1e-48 Identities = 311/431 (72%), Gaps = 34/431 (8%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || | | |||||||| | || |||||||||||||| ||| || Sbjct 5294 CCACAGGTCATCCCCC--AGGTTTTCAACCCTGGTGGGTTCGGTCCTCCACGAAGTC-TT 5238 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||| |||||||||||| || |||||| | | | || ||||||| | | || Sbjct 5237 ACCTCCGCTT-CAACCTGCCCAT-GGCTAGATCACTCCGCTT-CGGGTCT-TGAGCGTGC 5182 Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187 ||| | ||||||| | |||||||||| ||||||| || ||| | ||| | | | | Sbjct 5181 TACTGAAACGCCCTGTTCGGACTCGCTTT-CGCTACGGCTACCCCACCCGGGTTAACCTC 5123 Query 188 GC----CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC------C 237 || ||| | ||| |||| | | |||| | ||||||| |||||||||| | Sbjct 5122 GCAACACACCGCAAAC---TCGCAGGCTCATTCTTCAAAAGGCACGCAGTCACGAGACGC 5066 Query 238 CAACAAAG--TGG--------GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287 ||| ||| || |||||||| ||||||| ||| ||||||||||| ||||| Sbjct 5065 CAAGCAAGCTTGACGTCCGACGCTCCCACGGCTTGTAGGCACACGGTTTCAGGTACTATT 5006 Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 ||||||| ||| ||| ||| |||||| || |||||||||||||||| | | ||||||||| Sbjct 5005 TCACTCCGCTC-CCGCGGTACTTTTCACCATTCCCTCACGGTACTA-TCCGCTATCGGTC 4948 Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407 | | | ||||||| ||| | || ||||||| ||| ||||| || ||||||| || Sbjct 4947 ACCAGGGAATATTTAGGCTTAGCGGGTGGTCCCGCCAGATTCACACGGGATTTCTCGGGC 4888 Query 408 TCCGTCCTACT 418 |||| ||||| Sbjct 4887 CCCGTGCTACT 4877 >seq2677 Length=1202 Score = 208 bits (230), Expect = 2e-51 Identities = 291/396 (73%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| | |||||| |||||| || |||||| | ||| || |||| || Sbjct 762 TTTTCAACGTTTACTAGTTCGGACCTCCATCCCGT-GTTACCGGAACTT-CATCCTGACC 705 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 | ||| |||||| | |||| || ||||| | |||| ||||| ||||||| | |||| Sbjct 704 A-AGGGTAGATCACAAAGTTT-CGCGTCTACT-CCCACTGACTATGCGCCCTATTCAGAC 648 Query 150 TCGCTTTTCGCTACGCCTCCCC-----TATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204 ||||||| |||| || || | | || ||| |||| ||| |||| ||| | ||| || Sbjct 647 TCGCTTT-CGCTCCGGCTGCGCAACTTTAGTCGCTTAACCTT-GCCAGTGACAGTAACTC 590 Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264 | | | |||||| ||||||| |||| |||||| || | ||| |||| || ||||||| Sbjct 589 GTAGGCTCATTATGCAAAAGGCACGCCGTCACCAAATCACTTGG-CTCCGACCGCTTGTA 531 Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCT 323 || |||||||||||| |||||||||| || | | | ||||||||| | ||||||| | Sbjct 530 GGCGTACGGTTTCAGGTTCTATTTCACCCCGTTGTTCACGGTTCTTTTTCACCTTTCCTT 471 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383 ||| ||||| |||||||||||||| |||| ||||||||||||| |||||| | | Sbjct 470 CACAGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTACCAGATGGTGCTGGC 411 Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | ||||| || | |||| | ||| ||||||| Sbjct 410 AAATTCAAACGGGGCGTCTCCGACCCCGCCCTACTC 375 >seq2682 Length=265177 Score = 205 bits (226), Expect = 2e-50 Identities = 279/377 (74%), Gaps = 18/377 (5%) Strand=Plus/Plus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||| ||||||| ||||| | ||||||||||||||| || |||||| | | || Sbjct 14687 TCCGAAAACTTTT-CAACGTTTACCGGTTCGGTCCTCCACGATGT-GTTACC-AGCGCTT 14743 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 ||||||| || ||| |||||| | |||| || ||||| || | ||||| |||| Sbjct 14744 CAACCTGGTCA-AGGGTAGATCACAAAGTTT-CGCGTCTACGGCC-ACTGACTAATCGCC 14800 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-TTCGG---TTAAGCTTTGCCACTGA 195 ||| | ||||||||||| |||| || |||| | ||| |||| ||| |||| | | Sbjct 14801 CTATTCAGACTCGCTTT-CGCTTCGGCTCCTGTTCTTCAAACATTAACCTT-GCCAGTAA 14858 Query 196 AAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCA 255 ||| ||| | | |||||| ||||||| |||| ||||||| | |||||| | Sbjct 14859 CCGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCGAA------GGCTCCGA 14912 Query 256 CTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGC 315 | ||||||| || | ||||||| | |||||||||| || | | ||| |||||| | Sbjct 14913 CCGCTTGTAAGCGCATGGTTTCAAGTTCTATTTCACCCCGTTGCTCACGGTACTTTTCAC 14972 Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375 ||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||| Sbjct 14973 CTTTCCCTCACGGTACTCGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGCGGATG 15032 Query 376 GTCCCCCCATATTCAGA 392 || || || ||||||| Sbjct 15033 GTGCCGCCGGATTCAGA 15049 >seq1010 Length=5412 Score = 152 bits (168), Expect = 1e-34 Identities = 169/214 (79%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| ||| |||||| ||||| |||||||| Sbjct 1557 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 1614 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146 ||| || |||||| | ||||| |||||||| | | | ||| || ||||||||| | | Sbjct 1615 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGACGCCCTATTCA 1670 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||| ||| | | ||||| | |||||||| || | ||| ||||||| Sbjct 1671 GACTCGCTTT-CGCTGCGCATACGCCTATCGGCTTAAGCTT-GCTCGTTAAATTAAGTCG 1728 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 ||| ||||| |||||||||||||| |||||||| Sbjct 1729 CTGGCCCATAATACAAAAGGTACGATGTCACCCA 1762 >seq1092 Length=354092 Score = 122 bits (134), Expect = 2e-25 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||||| ||||||||||||| | | | |||||||||| ||||||||||||||||| Sbjct 88507 GGTTTCAGGTTCTATTTCACTCCTTTATTCAAGGTTCTTTTCACCTTTCCCTCACGGTAC 88448 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||||||||||| | | ||||||||||||||| Sbjct 88447 TAGTTCACTATCGGTGACTAAGTAGTATTTAGCCT 88413 >seq1489 Length=2939 Score = 96.9 bits (106), Expect = 9e-18 Identities = 117/149 (79%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| || | ||||||| ||||| | || |||||||||||||| ||| || Sbjct 1831 CCACAGGTCATCCCCC-AACTTTT-CAACGTTGGTGGGTTCGGTCCTCCACGCAGT-CTT 1775 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||| || |||||||||||||| || |||||| ||| | |||||||||| | || Sbjct 1774 ACCC-ACGCTTCAACCTGCCCAT-GGCTAGATCACCCCG-CTTCGGGTCTA-GAACATGC 1719 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTT 156 ||||| | |||||| | ||||||||||| Sbjct 1718 GACTATAGCGCCCTCTTCAGACTCGCTTT 1690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241514664832