Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq1316 407 4e-111
seq949 257 4e-66
seq962 251 2e-64
seq2403 224 2e-56
seq2677 208 2e-51
seq2682 205 2e-50
seq1010 152 1e-34
seq1092 122 2e-25
seq1489 96.9 9e-18
>seq1316
Length=3583
Score = 407 bits (450), Expect = 4e-111
Identities = 349/417 (84%), Gaps = 16/417 (4%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| |||||| |||| |||| |||||||||||| ||||||||
Sbjct 1340 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGACCTCCAGTACC 1283
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | ||||| |||||||| |
Sbjct 1282 T-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 1228
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||||||| |||||||| | |||||| ||| | ||||| || ||||||||||||||
Sbjct 1227 CCAGCGACTGAACGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAAC 1169
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA--C 241
||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1168 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCGTTTC 1110
Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301
| |||||| |||| ||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 1109 CA----GGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CC 1055
Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||
Sbjct 1054 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTT 995
Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||
Sbjct 994 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCTCGTGTCCCGCCCTACT 938
>seq949
Length=6172
Score = 257 bits (284), Expect = 4e-66
Identities = 286/365 (78%), Gaps = 19/365 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
|||||| |||| ||| ||||||| ||||| | |||||||||||||||||| || |||
Sbjct 3133 CCACAGATCAT-CCGGAAACTTTT-CAACGTTTATCGGTTCGGTCCTCCAGTACGT-GTT 3189
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
||| ||||| ||||||| |||| || |||||| | ||||| || ||||| ||||
Sbjct 3190 ACCGCACCTT-CAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCTCCCCT- 3245
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCC---CT-ATTCGGTTAAGC 184
||||| |||||||| | ||||||||||| |||| || ||| || | | |||| |
Sbjct 3246 GACTATACGCCCTATTCAGACTCGCTTT-CGCTTCGGATCCGTGTCTGAAACACTTAACC 3304
Query 185 TTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
|| |||| ||| | ||| ||| | | |||||| ||||||| |||| ||||| | ||
Sbjct 3305 TT-GCCAGAGAAGAGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACGCCACC- 3362
Query 244 AGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301
||| ||||| || ||||||| ||| || |||||||| |||||||||||||||| | |
Sbjct 3363 --TGGACGCTCCGACCGCTTGTAAGCACACAGTTTCAGGTTCTATTTCACTCCCCTGTTC 3420
Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
||||||| |||| |||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 3421 GGGGTTCGTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTT 3480
Query 362 AGCCT 366
|||||
Sbjct 3481 AGCCT 3485
>seq962
Length=5977
Score = 251 bits (278), Expect = 2e-64
Identities = 230/285 (81%), Gaps = 9/285 (3%)
Strand=Plus/Plus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCT--CCCCTATTCGGTTAAGCTTTGCCACTG 194
|||||| | ||||||||||| |||| |||| | |||| | |||||||| || | |
Sbjct 2726 GCCCTATTCAGACTCGCTTT-CGCTGCGCCCTACACCTACCGGCTTAAGCTT-GCTAGTT 2783
Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254
| | ||||||| |||||||||||||||| ||||||| ||||||| | |||||||
Sbjct 2784 ACACTAAGTCGTTGACCCATTATACAAA-GGTACGCCGTCACCCTT----GCGGGCTCCG 2838
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314
|||| ||||| |||| |||||||||| ||||||||||||||||| |||||| ||||||
Sbjct 2839 ACTGTTTGTAGGCATCCGGTTTCAGGTTCTATTTCACTCCCCTCGTCGGGGTGCTTTTCA 2898
Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374
|||||||||||||||||| |||| |||||||||| || |||| |||| ||||||| |
Sbjct 2899 CCTTTCCCTCACGGTACTTGTTCGCTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGT 2958
Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|||| |||||| |||||||| |||| ||||| ||| |||||||
Sbjct 2959 GGTCTCCCCATGTTCAGACAGGATTTCACGTGCCCCGCCCTACTC 3003
>seq2403
Length=69003
Score = 224 bits (248), Expect = 2e-56
Identities = 288/384 (75%), Gaps = 15/384 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
|||||| |||| || | | |||||||| | || ||||||| |||||| || ||
Sbjct 7510 CCACAGCTCATCCCCC--AGGTTTTCAACCCTGGTGGGTTCGGGCCTCCACGCGGTC-TT 7454
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||| ||| || |||| |||| || |||||| | | | || |||||||| | | ||
Sbjct 7453 ACCCGCGCTT-CACCCTGGCCAT-GGCTAGATCACACCGCTT-CGGGTCTAGACCAC-GC 7398
Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187
|||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | | | |
Sbjct 7397 GACTCAAGCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTAACCTC 7339
Query 188 GCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||| | | ||| |||| | | |||| | ||||||| |||| ||||||| ||
Sbjct 7338 GCCACGTAGCACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCCCTAAA--- 7282
Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306
|||||| || | ||||| ||| ||||||||||| |||||||||||||||| |||||||
Sbjct 7281 -GGCTCCGACGGATTGTAGGCACACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGT 7224
Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366
|||||| |||||||||||||||||||| | |||||||||| | ||||||||| ||
Sbjct 7223 ACTTTTCATCTTTCCCTCACGGTACTAGTCCGCTATCGGTCACCAGGGAGTATTTAGGCT 7164
Query 367 TGGAGGATGGTCCCCCCATATTCA 390
| | || ||||||| ||| |||||
Sbjct 7163 TAGCGGGTGGTCCCGCCAGATTCA 7140
Score = 199 bits (220), Expect = 1e-48
Identities = 311/431 (72%), Gaps = 34/431 (8%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||||||||| || | | |||||||| | || |||||||||||||| ||| ||
Sbjct 5294 CCACAGGTCATCCCCC--AGGTTTTCAACCCTGGTGGGTTCGGTCCTCCACGAAGTC-TT 5238
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
||| ||| |||||||||||| || |||||| | | | || ||||||| | | ||
Sbjct 5237 ACCTCCGCTT-CAACCTGCCCAT-GGCTAGATCACTCCGCTT-CGGGTCT-TGAGCGTGC 5182
Query 129 GACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTT 187
||| | ||||||| | |||||||||| ||||||| || ||| | ||| | | | |
Sbjct 5181 TACTGAAACGCCCTGTTCGGACTCGCTTT-CGCTACGGCTACCCCACCCGGGTTAACCTC 5123
Query 188 GC----CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC------C 237
|| ||| | ||| |||| | | |||| | ||||||| |||||||||| |
Sbjct 5122 GCAACACACCGCAAAC---TCGCAGGCTCATTCTTCAAAAGGCACGCAGTCACGAGACGC 5066
Query 238 CAACAAAG--TGG--------GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287
||| ||| || |||||||| ||||||| ||| ||||||||||| |||||
Sbjct 5065 CAAGCAAGCTTGACGTCCGACGCTCCCACGGCTTGTAGGCACACGGTTTCAGGTACTATT 5006
Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347
||||||| ||| ||| ||| |||||| || |||||||||||||||| | | |||||||||
Sbjct 5005 TCACTCCGCTC-CCGCGGTACTTTTCACCATTCCCTCACGGTACTA-TCCGCTATCGGTC 4948
Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGC 407
| | | ||||||| ||| | || ||||||| ||| ||||| || ||||||| ||
Sbjct 4947 ACCAGGGAATATTTAGGCTTAGCGGGTGGTCCCGCCAGATTCACACGGGATTTCTCGGGC 4888
Query 408 TCCGTCCTACT 418
|||| |||||
Sbjct 4887 CCCGTGCTACT 4877
>seq2677
Length=1202
Score = 208 bits (230), Expect = 2e-51
Identities = 291/396 (73%), Gaps = 14/396 (4%)
Strand=Plus/Minus
Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89
||||||||| | |||||| |||||| || |||||| | ||| || |||| ||
Sbjct 762 TTTTCAACGTTTACTAGTTCGGACCTCCATCCCGT-GTTACCGGAACTT-CATCCTGACC 705
Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149
| ||| |||||| | |||| || ||||| | |||| ||||| ||||||| | ||||
Sbjct 704 A-AGGGTAGATCACAAAGTTT-CGCGTCTACT-CCCACTGACTATGCGCCCTATTCAGAC 648
Query 150 TCGCTTTTCGCTACGCCTCCCC-----TATTCGGTTAAGCTTTGCCACTGAAAATAAGTC 204
||||||| |||| || || | | || ||| |||| ||| |||| ||| | ||| ||
Sbjct 647 TCGCTTT-CGCTCCGGCTGCGCAACTTTAGTCGCTTAACCTT-GCCAGTGACAGTAACTC 590
Query 205 GCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTA 264
| | | |||||| ||||||| |||| |||||| || | ||| |||| || |||||||
Sbjct 589 GTAGGCTCATTATGCAAAAGGCACGCCGTCACCAAATCACTTGG-CTCCGACCGCTTGTA 531
Query 265 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCT 323
|| |||||||||||| |||||||||| || | | | ||||||||| | ||||||| |
Sbjct 530 GGCGTACGGTTTCAGGTTCTATTTCACCCCGTTGTTCACGGTTCTTTTTCACCTTTCCTT 471
Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383
||| ||||| |||||||||||||| |||| ||||||||||||| |||||| | |
Sbjct 470 CACAGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTACCAGATGGTGCTGGC 411
Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
| ||||| || | |||| | ||| |||||||
Sbjct 410 AAATTCAAACGGGGCGTCTCCGACCCCGCCCTACTC 375
>seq2682
Length=265177
Score = 205 bits (226), Expect = 2e-50
Identities = 279/377 (74%), Gaps = 18/377 (5%)
Strand=Plus/Plus
Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79
|||| ||||||| ||||| | ||||||||||||||| || |||||| | | ||
Sbjct 14687 TCCGAAAACTTTT-CAACGTTTACCGGTTCGGTCCTCCACGATGT-GTTACC-AGCGCTT 14743
Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139
||||||| || ||| |||||| | |||| || ||||| || | ||||| ||||
Sbjct 14744 CAACCTGGTCA-AGGGTAGATCACAAAGTTT-CGCGTCTACGGCC-ACTGACTAATCGCC 14800
Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-TTCGG---TTAAGCTTTGCCACTGA 195
||| | ||||||||||| |||| || |||| | ||| |||| ||| |||| | |
Sbjct 14801 CTATTCAGACTCGCTTT-CGCTTCGGCTCCTGTTCTTCAAACATTAACCTT-GCCAGTAA 14858
Query 196 AAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCA 255
||| ||| | | |||||| ||||||| |||| ||||||| | |||||| |
Sbjct 14859 CCGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCGAA------GGCTCCGA 14912
Query 256 CTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGC 315
| ||||||| || | ||||||| | |||||||||| || | | ||| |||||| |
Sbjct 14913 CCGCTTGTAAGCGCATGGTTTCAAGTTCTATTTCACCCCGTTGCTCACGGTACTTTTCAC 14972
Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATG 375
||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||
Sbjct 14973 CTTTCCCTCACGGTACTCGTTCACTATCGGTCTCTCAGGAGTATTTAGCCTTGGCGGATG 15032
Query 376 GTCCCCCCATATTCAGA 392
|| || || |||||||
Sbjct 15033 GTGCCGCCGGATTCAGA 15049
>seq1010
Length=5412
Score = 152 bits (168), Expect = 1e-34
Identities = 169/214 (79%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87
|||||||||| | | ||||||||||||||| ||| |||||| ||||| ||||||||
Sbjct 1557 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGAGT-GTTACCTCACCTT-CAACCTGC 1614
Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGACGCCCTAGTAA 146
||| || |||||| | ||||| |||||||| | | | ||| || ||||||||| | |
Sbjct 1615 TCAT-GGCTAGATCACTAGGTTT-CGGGTCTAATAC--AACGAACTTGACGCCCTATTCA 1670
Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205
|||||||||| |||| ||| | | ||||| | |||||||| || | ||| |||||||
Sbjct 1671 GACTCGCTTT-CGCTGCGCATACGCCTATCGGCTTAAGCTT-GCTCGTTAAATTAAGTCG 1728
Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA 239
||| ||||| |||||||||||||| ||||||||
Sbjct 1729 CTGGCCCATAATACAAAAGGTACGATGTCACCCA 1762
>seq1092
Length=354092
Score = 122 bits (134), Expect = 2e-25
Identities = 84/95 (88%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331
||||||||| ||||||||||||| | | | |||||||||| |||||||||||||||||
Sbjct 88507 GGTTTCAGGTTCTATTTCACTCCTTTATTCAAGGTTCTTTTCACCTTTCCCTCACGGTAC 88448
Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366
||||||||||||||| | | |||||||||||||||
Sbjct 88447 TAGTTCACTATCGGTGACTAAGTAGTATTTAGCCT 88413
>seq1489
Length=2939
Score = 96.9 bits (106), Expect = 9e-18
Identities = 117/149 (79%), Gaps = 8/149 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||||||||| || | ||||||| ||||| | || |||||||||||||| ||| ||
Sbjct 1831 CCACAGGTCATCCCCC-AACTTTT-CAACGTTGGTGGGTTCGGTCCTCCACGCAGT-CTT 1775
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||| || |||||||||||||| || |||||| ||| | |||||||||| | ||
Sbjct 1774 ACCC-ACGCTTCAACCTGCCCAT-GGCTAGATCACCCCG-CTTCGGGTCTA-GAACATGC 1719
Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTT 156
||||| | |||||| | |||||||||||
Sbjct 1718 GACTATAGCGCCCTCTTCAGACTCGCTTT 1690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241514664832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |