Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq6253 214 1e-53 seq2000 165 7e-39 seq1010 141 8e-32 seq2403 122 7e-26 seq949 116 3e-24 seq1489 80.6 2e-13 >seq6253 Length=1059 Score = 214 bits (236), Expect = 1e-53 Identities = 144/161 (89%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| |||| ||||||| ||||||||||||| Sbjct 222 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGCTTTATGGGATTGGCTCCCCCTCGCG 281 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| ||||||||| ||||||||||||||||| ||||| ||| |||||||||| Sbjct 282 GGTTGGCAACCCTCTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 341 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 382 >seq2000 Length=1661 Score = 165 bits (182), Expect = 7e-39 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| |||||| || | | ||| | |||||| Sbjct 977 TCGAGTTGCAGACTCCGATCCGGACTACGACGCACTTTGTGAGGTCCGCTTGCTCTCGCG 1036 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || | || |||||| |||||||| ||||||| |||||||| | ||||||||| Sbjct 1037 AGGTCGCTTCTCTTTGTATGCGCCATTGTAGCACGTGTGTAGCCCTACTCGTAAGGGCCA 1096 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||||||||||||||||||||||||||| |||| Sbjct 1097 TGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTATCAC 1137 >seq1010 Length=5412 Score = 141 bits (156), Expect = 8e-32 Identities = 127/157 (81%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || ||||| ||||||||||| || |||| Sbjct 3391 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGACTTTTAGGGATTAGCTCACCTTCGC 3448 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || | || ||||||||| |||||||| ||||||| ||||| | |||||||| Sbjct 3449 AGGGTTGCAACCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCTTGTAAGGGCC 3508 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||| ||||||||||||| || Sbjct 3509 ATGAGGACTTGACGTCATCCACACCTTCCTCCGGCTT 3545 Score = 113 bits (124), Expect = 4e-23 Identities = 116/148 (78%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 16 CAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCT-C 74 ||||||| ||| ||| |||| | ||||||||| | |||| | | || |||| | Sbjct 4356 CAATCCGAACTGAGATGG-CTTTTGGAGATTAGCTCGACATCGCTGTCTCGCTGCCCGAC 4414 Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 ||| ||||||||| ||||||| ||||| ||| ||||||||||||||||||||||| Sbjct 4415 TGTCACCACCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCATGAGGACTTGACGT 4474 Query 135 CATCCCCACCTTCCTC-CGGTTTGTCAC 161 |||||||||||||||| ||| || |||| Sbjct 4475 CATCCCCACCTTCCTCTCGGCTTATCAC 4502 >seq2403 Length=69003 Score = 122 bits (134), Expect = 7e-26 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || |||| || |||| ||||| |||| || Sbjct 3893 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGGCTTTTTGAGATTCGCTCCACCTCACG 3834 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || || | |||| |||||||| ||||||| ||||| | |||||||| || Sbjct 3833 GTATCGCAGCTCATTGTACCGGCCATTGTAGCACGTGTGCAGCCCAAGACATAAGGGGCA 3774 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| ||||||||||| |||||||||||||||| Sbjct 3773 TGATGACTTGACGTCGTCCCCACCTTCCTCCG 3742 >seq949 Length=6172 Score = 116 bits (128), Expect = 3e-24 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||||| || |||| |||| | || | Sbjct 5017 CGAGTTGCAGCCTGCAATCCGAACTGAGACGTACTTTTTGTGATTGGCTCACTGTCACCA 5076 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || | |||||||| |||||||| ||||||| |||||| | |||||||||| Sbjct 5077 GCTTGCAACACTCTGTATACGCCATTGTAGCACGTGTGTAGCCCTGGGCGTAAGGGCCAT 5136 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150 || ||||||||||||||||| |||||||| Sbjct 5137 GATGACTTGACGTCATCCCCTCCTTCCTC 5165 >seq1489 Length=2939 Score = 80.6 bits (88), Expect = 2e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 69 GCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACT 128 ||||| |||| |||||||| | | |||||||||| |||||||| ||||| |||| Sbjct 1012 GCCCTTTGTACCGGCCATTGTAGCATGCGTGAAGCCCTGGACATAAGGGGCATGATGACT 953 Query 129 TGACGTCATCCCCACCTTCCTCCG 152 ||||||||||||| ||||||||| Sbjct 952 TGACGTCATCCCCCACTTCCTCCG 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415972301810