Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq6253 214 1e-53
seq2000 165 7e-39
seq1010 141 8e-32
seq2403 122 7e-26
seq949 116 3e-24
seq1489 80.6 2e-13
>seq6253
Length=1059
Score = 214 bits (236), Expect = 1e-53
Identities = 144/161 (89%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||||| | ||||||||||||| |||| ||||||| |||||||||||||
Sbjct 222 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGCTTTATGGGATTGGCTCCCCCTCGCG 281
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
||||||| ||||||||| ||||||||||||||||| ||||| ||| ||||||||||
Sbjct 282 GGTTGGCAACCCTCTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 341
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 382
>seq2000
Length=1661
Score = 165 bits (182), Expect = 7e-39
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||||| | ||||||||||||| |||||| || | | ||| | ||||||
Sbjct 977 TCGAGTTGCAGACTCCGATCCGGACTACGACGCACTTTGTGAGGTCCGCTTGCTCTCGCG 1036
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || | || |||||| |||||||| ||||||| |||||||| | |||||||||
Sbjct 1037 AGGTCGCTTCTCTTTGTATGCGCCATTGTAGCACGTGTGTAGCCCTACTCGTAAGGGCCA 1096
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1097 TGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTATCAC 1137
>seq1010
Length=5412
Score = 141 bits (156), Expect = 8e-32
Identities = 127/157 (81%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59
|||||||||||| | ||||||| ||| || || ||||| ||||||||||| || ||||
Sbjct 3391 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGACTTTTAGGGATTAGCTCACCTTCGC 3448
Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119
|| | || ||||||||| |||||||| ||||||| ||||| | ||||||||
Sbjct 3449 AGGGTTGCAACCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCTTGTAAGGGCC 3508
Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156
|||||||||||||||||||| ||||||||||||| ||
Sbjct 3509 ATGAGGACTTGACGTCATCCACACCTTCCTCCGGCTT 3545
Score = 113 bits (124), Expect = 4e-23
Identities = 116/148 (78%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 16 CAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCT-C 74
||||||| ||| ||| |||| | ||||||||| | |||| | | || |||| |
Sbjct 4356 CAATCCGAACTGAGATGG-CTTTTGGAGATTAGCTCGACATCGCTGTCTCGCTGCCCGAC 4414
Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134
||| ||||||||| ||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 4415 TGTCACCACCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCATGAGGACTTGACGT 4474
Query 135 CATCCCCACCTTCCTC-CGGTTTGTCAC 161
|||||||||||||||| ||| || ||||
Sbjct 4475 CATCCCCACCTTCCTCTCGGCTTATCAC 4502
>seq2403
Length=69003
Score = 122 bits (134), Expect = 7e-26
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
||||||||||||| ||||||| ||| || |||| || |||| ||||| |||| ||
Sbjct 3893 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGGCTTTTTGAGATTCGCTCCACCTCACG 3834
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || || | |||| |||||||| ||||||| ||||| | |||||||| ||
Sbjct 3833 GTATCGCAGCTCATTGTACCGGCCATTGTAGCACGTGTGCAGCCCAAGACATAAGGGGCA 3774
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152
||| ||||||||||| ||||||||||||||||
Sbjct 3773 TGATGACTTGACGTCGTCCCCACCTTCCTCCG 3742
>seq949
Length=6172
Score = 116 bits (128), Expect = 3e-24
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || ||||||| ||| || ||||| || |||| |||| | || |
Sbjct 5017 CGAGTTGCAGCCTGCAATCCGAACTGAGACGTACTTTTTGTGATTGGCTCACTGTCACCA 5076
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || | |||||||| |||||||| ||||||| |||||| | ||||||||||
Sbjct 5077 GCTTGCAACACTCTGTATACGCCATTGTAGCACGTGTGTAGCCCTGGGCGTAAGGGCCAT 5136
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150
|| ||||||||||||||||| ||||||||
Sbjct 5137 GATGACTTGACGTCATCCCCTCCTTCCTC 5165
>seq1489
Length=2939
Score = 80.6 bits (88), Expect = 2e-13
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 69 GCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACT 128
||||| |||| |||||||| | | |||||||||| |||||||| ||||| ||||
Sbjct 1012 GCCCTTTGTACCGGCCATTGTAGCATGCGTGAAGCCCTGGACATAAGGGGCATGATGACT 953
Query 129 TGACGTCATCCCCACCTTCCTCCG 152
||||||||||||| |||||||||
Sbjct 952 TGACGTCATCCCCCACTTCCTCCG 929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415972301810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |