Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq2403 271 1e-70
seq1010 257 3e-66
seq6110 244 2e-62
seq6253 232 1e-58
seq1489 230 4e-58
seq949 212 1e-52
seq2682 143 4e-32
seq2000 104 4e-20
seq962 104 4e-20
seq6661 78.8 2e-12
>seq2403
Length=69003
Score = 271 bits (300), Expect = 1e-70
Identities = 234/290 (81%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||||||||||||| | | |||| ||||||||||||||| |||||
Sbjct 3336 CCCACGCTTTCGCTCCTCAGCGTCAGTAATGGCCCAGAGATCCGCCTTCGCCACCGGTGT 3277
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| |||||| |||||||||||||||||| ||||||||||| || || | |||
Sbjct 3276 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCGATCTCCCCTACCACAC 3217
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || | || || ||||||| | ||||| ||||| | ||||||||| |||
Sbjct 3216 TCTAGCTTGCCCGTATCGAATGCAGACCCGGGGTTAAGCCCCGGGCTTTCACATCCGACG 3157
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||||| || |||||| |||||||| |||||| ||||||||| ||||||
Sbjct 3156 TGACAAGCCGCCTACGAGCTCTTTACGCCCAATAATTCCGGACAACGCTTGCGCCCTACG 3097
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 3096 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGCGCTTCTTCTGCAGGTA 3047
>seq1010
Length=5412
Score = 257 bits (284), Expect = 3e-66
Identities = 226/282 (80%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||||||||||||| | | |||| || |||||||||||||||||||
Sbjct 4893 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGACCAGTAAGCCGCCTTCGCCACTGGTGT 4952
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
||||||| ||||||||| |||||||| |||||| ||||||||| || ||||| | ||
Sbjct 4953 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTTACCTCTTCCATAC 5012
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|||||| | |||| ||||| |||| | ||||||| | |||||| ||||||
Sbjct 5013 TCAAGATACCCAGTATCAAAGGCAGTTCCGGAGTTGAGCTGCGGGATTTCACCCCTGACT 5072
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||||| || |||||| |||| ||| |||| | |||||| ||| ||| ||
Sbjct 5073 TAAATATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTTCG 5132
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
|||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 5133 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 5174
>seq6110
Length=1082
Score = 244 bits (270), Expect = 2e-62
Identities = 228/290 (79%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| |||||||||||||| || | |||| | ||||||||||||||||||
Sbjct 83 CCCACGCTTTCGAGCCTCAGCGTCAGTAACGGACCAGTATGTCGCCTTCGCCACTGGTGT 142
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| |||| ||||||||| |||||||| |||||| |||| |||| | ||||| | | ||
Sbjct 143 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACATACCTCTTCCGTAC 202
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|||||| |||| ||||| ||| |||||||||| | |||||| ||| |||
Sbjct 203 TCAAGACTGCCAGTATCAAAGGCAATTCCAAGGTTGAGCCCTGGGCTTTCACCTCTAACT 262
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||||| | |||||||| |||| ||| |||| |||||| ||| ||| ||
Sbjct 263 TAACAGTCCGCCTACGCTCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 322
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||| ||||||||| ||||| ||| | ||||
Sbjct 323 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 372
>seq6253
Length=1059
Score = 232 bits (256), Expect = 1e-58
Identities = 226/290 (78%), Gaps = 1/290 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| || | ||||||||| |||| |||||||||| |||||
Sbjct 769 CCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGGGGATTGCCTTCGCCATCGGTGT 828
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | | ||
Sbjct 829 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTGCCGTAC 888
Query 121 TCAAGAAAAA-CAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179
|| || | |||| ||||||||| |||||||||| | ||||||||||| |
Sbjct 889 TCTAGCCTATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTC 948
Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239
|||| | |||||| | | | |||||| |||| ||| |||| |||||||||| |||||
Sbjct 949 TTGCATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTAC 1008
Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGT 289
||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1009 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGT 1058
>seq1489
Length=2939
Score = 230 bits (254), Expect = 4e-58
Identities = 225/290 (78%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||||||||||||| | | |||| | | |||||||||| |||||
Sbjct 532 CCCACGCTTTCGCTCCTCAGCGTCAGTATCGGCCCAGAGACCTGCCTTCGCCATCGGTGT 473
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| |||||| |||||||||||||||||| |||||||| | || || | | ||
Sbjct 472 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGTCTCCCCTACCGAAC 413
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || | || || |||||| | | ||||||||| || |||||||| |||
Sbjct 412 TCTAGCCTGCCCGTATCGAATGCAATGTCAGAGTTGAGCCCTGAGATTTCACATTCGACG 353
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||||| || |||||| ||||||||||||||| |||||| || ||||||
Sbjct 352 CGACAAGCCGCCTACGAGCTCTTTACGCCCAATAAATCCGGACAACGCTCGCGCCCTACG 293
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
| ||||||||||||||||||||||||| |||| |||| ||| ||||||
Sbjct 292 TCTTACCGCGGCTGCTGGCACGTAGTTGGCCGGCGCTTCTTCTGCAGGTA 243
>seq949
Length=6172
Score = 212 bits (234), Expect = 1e-52
Identities = 221/290 (76%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||| |||||| |||||||||||||||| | || | | |||||||| | |||||
Sbjct 5561 CCCACACTTTCGTGCCTCAGCGTCAGTTAAAGCTTAGTGAGCTGCCTTCGCAATCGGTGT 5620
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| | ||||||| ||||||||||||||||| ||||||| |||| | ||
Sbjct 5621 TCTTGACGATATCTAAGCATTTCACCGCTACACCGTCAATTCCGCCCACCTCAACTTTAC 5680
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
||||| |||| |||| || || |||| |||| | ||||| ||||||
Sbjct 5681 TCAAGCTCTGCAGTATCAATGCCACCCTCCCGGTTAAGCCGGGATATTTCAGCACTGACT 5740
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| |||||||| | ||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 5741 TATAGAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGACAACGCTCGCCACCTACG 5800
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 5801 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCACCAGGTA 5850
>seq2682
Length=265177
Score = 143 bits (158), Expect = 4e-32
Identities = 210/292 (72%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59
|||| ||||||| ||||||| |||| | || ||| | | |||||||| | ||||
Sbjct 16255 CCCATGCTTTCGTGCCTCAGTGTCAAAC-CAATCGTAGCCACCTGCCTTCGCAATCGGTG 16313
Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119
||| ||||||| ||||||||||||||||| |||||| ||||| | | |
Sbjct 16314 TTCTGGATGATATCTATGCATTTCACCGCTACACCATCCATTCCGGCAGCCTC-CAATTA 16372
Query 120 CT-CAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178
| |||| |||| |||| ||| | ||||||| | |||||| ||||
Sbjct 16373 TTTCAAGCTTTTCAGTATCAATGGCACCTCAACCGTTGAGCGGCTGTATTTCACCACTGA 16432
Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238
||| || ||||| | ||||||| |||||||||||||||| |||||| || |||
Sbjct 16433 CTTAAAAAGCCACCTACGCACCCTTTAAACCCAATAAATCCGGACAACGCTCGCACCCTC 16492
Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||| ||||||||| |||||||| | ||||
Sbjct 16493 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATTCGGTA 16544
>seq2000
Length=1661
Score = 104 bits (114), Expect = 4e-20
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| ||||||| |||||| |||||| | | |||||||||| | |||
Sbjct 1524 CCCACGCTTTCGTGCCTCAGTGTCAGTGTTGGTCCAGGTAGCTGCCTTCGCCATGGATGT 1583
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||| ||||||| |||||||| | ||||| | |||
Sbjct 1584 TCCTCCCGATCTCTACGCATTTCACTGCTACACCGGGAATTCCACTACCCTCTACCACAC 1643
Query 121 TCAAG 125
|| ||
Sbjct 1644 TCTAG 1648
>seq962
Length=5977
Score = 104 bits (114), Expect = 4e-20
Identities = 86/104 (83%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 187 CCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTAC 246
||||||||| | ||| |||| |||| | | |||| |||||| ||| ||| ||||||||
Sbjct 4745 CCCGCCTACGCACCCCTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTCGTATTAC 4804
Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| | ||||
Sbjct 4805 CGCGGCTGCTGGCACGAAGTTAGCCG-GGCTTATTCTTGCGGTA 4847
>seq6661
Length=1004
Score = 78.8 bits (86), Expect = 2e-12
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 51
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828744816683
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |