Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2403 271 1e-70 seq1010 257 3e-66 seq6110 244 2e-62 seq6253 232 1e-58 seq1489 230 4e-58 seq949 212 1e-52 seq2682 143 4e-32 seq2000 104 4e-20 seq962 104 4e-20 seq6661 78.8 2e-12 >seq2403 Length=69003 Score = 271 bits (300), Expect = 1e-70 Identities = 234/290 (81%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| ||||||||||||||| ||||| Sbjct 3336 CCCACGCTTTCGCTCCTCAGCGTCAGTAATGGCCCAGAGATCCGCCTTCGCCACCGGTGT 3277 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| ||||||||||| || || | ||| Sbjct 3276 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCGATCTCCCCTACCACAC 3217 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | || || ||||||| | ||||| ||||| | ||||||||| ||| Sbjct 3216 TCTAGCTTGCCCGTATCGAATGCAGACCCGGGGTTAAGCCCCGGGCTTTCACATCCGACG 3157 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||||| || |||||| |||||||| |||||| ||||||||| |||||| Sbjct 3156 TGACAAGCCGCCTACGAGCTCTTTACGCCCAATAATTCCGGACAACGCTTGCGCCCTACG 3097 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||| ||| |||||| Sbjct 3096 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGCGCTTCTTCTGCAGGTA 3047 >seq1010 Length=5412 Score = 257 bits (284), Expect = 3e-66 Identities = 226/282 (80%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| || ||||||||||||||||||| Sbjct 4893 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGACCAGTAAGCCGCCTTCGCCACTGGTGT 4952 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||| |||||||| |||||| ||||||||| || ||||| | || Sbjct 4953 TCCTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTTACCTCTTCCATAC 5012 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| ||||| |||| | ||||||| | |||||| |||||| Sbjct 5013 TCAAGATACCCAGTATCAAAGGCAGTTCCGGAGTTGAGCTGCGGGATTTCACCCCTGACT 5072 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||| | |||||| ||| ||| || Sbjct 5073 TAAATATCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTTCG 5132 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 5133 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 5174 >seq6110 Length=1082 Score = 244 bits (270), Expect = 2e-62 Identities = 228/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| || | |||| | |||||||||||||||||| Sbjct 83 CCCACGCTTTCGAGCCTCAGCGTCAGTAACGGACCAGTATGTCGCCTTCGCCACTGGTGT 142 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| |||| |||| | ||||| | | || Sbjct 143 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACATACCTCTTCCGTAC 202 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| |||| ||||| ||| |||||||||| | |||||| ||| ||| Sbjct 203 TCAAGACTGCCAGTATCAAAGGCAATTCCAAGGTTGAGCCCTGGGCTTTCACCTCTAACT 262 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | |||||||| |||| ||| |||| |||||| ||| ||| || Sbjct 263 TAACAGTCCGCCTACGCTCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 322 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 323 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 372 >seq6253 Length=1059 Score = 232 bits (256), Expect = 1e-58 Identities = 226/290 (78%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| |||| |||||||||| ||||| Sbjct 769 CCCACGCTTTCGTGCATGAGCGTCAGTGTTATCCCAGGGGATTGCCTTCGCCATCGGTGT 828 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 ||||||| ||||||||||||||||| ||||||| ||||||||| ||||| | | || Sbjct 829 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCCATCCCCCTCTGCCGTAC 888 Query 121 TCAAGAAAAA-CAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || | |||| ||||||||| |||||||||| | ||||||||||| | Sbjct 889 TCTAGCCTATGCAGTCACAAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCTGTC 948 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 |||| | |||||| | | | |||||| |||| ||| |||| |||||||||| ||||| Sbjct 949 TTGCATAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTAC 1008 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGT 289 ||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1009 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGT 1058 >seq1489 Length=2939 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| | | |||||||||| ||||| Sbjct 532 CCCACGCTTTCGCTCCTCAGCGTCAGTATCGGCCCAGAGACCTGCCTTCGCCATCGGTGT 473 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| |||||||| | || || | | || Sbjct 472 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGTCTCCCCTACCGAAC 413 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | || || |||||| | | ||||||||| || |||||||| ||| Sbjct 412 TCTAGCCTGCCCGTATCGAATGCAATGTCAGAGTTGAGCCCTGAGATTTCACATTCGACG 353 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| ||||||||||||||| |||||| || |||||| Sbjct 352 CGACAAGCCGCCTACGAGCTCTTTACGCCCAATAAATCCGGACAACGCTCGCGCCCTACG 293 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||||||||||||||||||| |||| |||| ||| |||||| Sbjct 292 TCTTACCGCGGCTGCTGGCACGTAGTTGGCCGGCGCTTCTTCTGCAGGTA 243 >seq949 Length=6172 Score = 212 bits (234), Expect = 1e-52 Identities = 221/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| |||||| |||||||||||||||| | || | | |||||||| | ||||| Sbjct 5561 CCCACACTTTCGTGCCTCAGCGTCAGTTAAAGCTTAGTGAGCTGCCTTCGCAATCGGTGT 5620 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | ||||||| ||||||||||||||||| ||||||| |||| | || Sbjct 5621 TCTTGACGATATCTAAGCATTTCACCGCTACACCGTCAATTCCGCCCACCTCAACTTTAC 5680 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| |||| |||| || || |||| |||| | ||||| |||||| Sbjct 5681 TCAAGCTCTGCAGTATCAATGCCACCCTCCCGGTTAAGCCGGGATATTTCAGCACTGACT 5740 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| | ||||||| |||||||||||||||| |||||| |||||||||| Sbjct 5741 TATAGAGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGACAACGCTCGCCACCTACG 5800 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 5801 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCACCAGGTA 5850 >seq2682 Length=265177 Score = 143 bits (158), Expect = 4e-32 Identities = 210/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||| ||||||| ||||||| |||| | || ||| | | |||||||| | |||| Sbjct 16255 CCCATGCTTTCGTGCCTCAGTGTCAAAC-CAATCGTAGCCACCTGCCTTCGCAATCGGTG 16313 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||| ||||||| ||||||||||||||||| |||||| ||||| | | | Sbjct 16314 TTCTGGATGATATCTATGCATTTCACCGCTACACCATCCATTCCGGCAGCCTC-CAATTA 16372 Query 120 CT-CAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 | |||| |||| |||| ||| | ||||||| | |||||| |||| Sbjct 16373 TTTCAAGCTTTTCAGTATCAATGGCACCTCAACCGTTGAGCGGCTGTATTTCACCACTGA 16432 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| || ||||| | ||||||| |||||||||||||||| |||||| || ||| Sbjct 16433 CTTAAAAAGCCACCTACGCACCCTTTAAACCCAATAAATCCGGACAACGCTCGCACCCTC 16492 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 16493 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATTCGGTA 16544 >seq2000 Length=1661 Score = 104 bits (114), Expect = 4e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||||| |||||| | | |||||||||| | ||| Sbjct 1524 CCCACGCTTTCGTGCCTCAGTGTCAGTGTTGGTCCAGGTAGCTGCCTTCGCCATGGATGT 1583 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| |||||||| | ||||| | ||| Sbjct 1584 TCCTCCCGATCTCTACGCATTTCACTGCTACACCGGGAATTCCACTACCCTCTACCACAC 1643 Query 121 TCAAG 125 || || Sbjct 1644 TCTAG 1648 >seq962 Length=5977 Score = 104 bits (114), Expect = 4e-20 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 187 CCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTAC 246 ||||||||| | ||| |||| |||| | | |||| |||||| ||| ||| |||||||| Sbjct 4745 CCCGCCTACGCACCCCTTACGCCCAGTGATTCCGAGCAACGCTAGCCCCCTTCGTATTAC 4804 Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| | |||| Sbjct 4805 CGCGGCTGCTGGCACGAAGTTAGCCG-GGCTTATTCTTGCGGTA 4847 >seq6661 Length=1004 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828744816683