Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq1316 167 2e-39 seq1010 118 7e-25 seq962 116 3e-24 seq2682 114 9e-24 seq6569 113 3e-23 seq949 113 3e-23 seq6592 111 1e-22 seq4859 80.6 2e-13 seq2403 80.6 2e-13 seq5365 75.2 8e-12 >seq1316 Length=3583 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 3102 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 3043 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||||| ||| |||||||||||||| Sbjct 3042 CTTTCGTACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 2983 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 2982 TAGCACGATGTCCGACCGTA 2963 >seq1010 Length=5412 Score = 118 bits (130), Expect = 7e-25 Identities = 108/134 (81%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 6 TTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTC 65 ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| Sbjct 1 TTTATCCGTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTC 60 Query 66 GCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCACTA 125 | ||||||| | |||| ||||||| ||| || ||| |||||||||||| || | Sbjct 61 GTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACT-CGACGA 119 Query 126 -CGATTTCCGACCG 138 ||||||||||||| Sbjct 120 CCGATTTCCGACCG 133 >seq962 Length=5977 Score = 116 bits (128), Expect = 3e-24 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1017 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 1076 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 1077 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCT 1136 Query 121 CAC-TACGATTTCCGACCG 138 || || ||||| |||| Sbjct 1137 AACAGCCGGTTTCCAACCG 1155 >seq2682 Length=265177 Score = 114 bits (126), Expect = 9e-24 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| |||| Sbjct 13095 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATACCCTG 13154 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| || |||||| | || | ||||||| |||||| ||| | | |||||||| Sbjct 13155 GTTTCCCACCTGCTCGACCCGTCGGTCTCGCAGTCAAGCCTGCTTGTACTATTGCACT 13212 >seq6569 Length=1015 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| | ||| Sbjct 344 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTA 403 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||| | ||||| | || | ||| ||| |||||||| ||| |||| |||||| Sbjct 404 GTTTCCTACCTGCTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCAC 460 >seq949 Length=6172 Score = 113 bits (124), Expect = 3e-23 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| || | ||||||||||||||| || Sbjct 684 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGT 743 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| ||| || | |||| |||| || ||||||| ||| ||| |||||||| Sbjct 744 CTTTCGACCCTGATCGACTTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACTCC 803 Query 120 TCACTACGATTTCCGACCGTA 140 ||| |||| || || | |||| Sbjct 804 TCA-TACGGTTACCAAGCGTA 823 >seq6592 Length=1011 Score = 111 bits (122), Expect = 1e-22 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 8 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATTCGGTACCACCGGATCACTAAGTCCGA 67 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | ||||||| ||||| | | | |||| ||||||| | Sbjct 68 CTTTCGTCCCTGCTCGACTTGTAGGTCTCGCAGTCAAG--CTCCTATGCCTTTGCACTCT 125 Query 121 CACTACGATTTCCGACCG 138 |||||||| |||| Sbjct 126 GCGCGCGATTTCCAACCG 143 >seq4859 Length=1423 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAG--CCACCGGATCACTATGACC 58 ||||||||||||||||||||| |||| ||||| || | || ||||||||||| || Sbjct 1154 TACCTTTTATCCGTTGAGCGACGGCCATTCCA--CAATGTACCGCCGGATCACTAGTCCC 1097 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| || ||| ||||| || |||||| | ||| ||| || |||| Sbjct 1096 GACTTTCGTCCCTGCTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACT 1037 >seq2403 Length=69003 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAG--CCACCGGATCACTATGACC 58 ||||||||||||||||||||| |||| ||||| || | || ||||||||||| || Sbjct 9032 TACCTTTTATCCGTTGAGCGACGGCCATTCCA--CAATGTACCGCCGGATCACTAGTCCC 8975 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| || ||| ||||| || |||||| | ||| ||| || |||| Sbjct 8974 GACTTTCGTCCCTGCTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACT 8915 >seq5365 Length=1235 Score = 75.2 bits (82), Expect = 8e-12 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57 ||||||||||||||||||||| ||| |||||| || |||||||| |||||||| | Sbjct 1040 TACCTTTTATCCGTTGAGCGACGGCGCTTCCA--CA-AGCCACCGCCGGATCACTAGTCC 984 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | || | |||| || |||||| | ||| ||| || ||| Sbjct 983 CGACTTTCGTCCCTGCTCGACCCGTCGGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 924 Query 118 T 118 | Sbjct 923 T 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351977319100