Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq1316 178 1e-42
seq6569 159 3e-37
seq2682 149 6e-34
seq1010 138 1e-30
seq962 131 2e-28
seq6592 122 8e-26
seq949 120 3e-25
seq5365 78.8 9e-13
seq4859 78.8 9e-13
seq2403 78.8 9e-13
>seq1316
Length=3583
Score = 178 bits (196), Expect = 1e-42
Identities = 133/156 (85%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||
Sbjct 3090 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 3031
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 3030 CTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 2971
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||||| |||| ||||||| |||||||||||
Sbjct 2970 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 2935
>seq6569
Length=1015
Score = 159 bits (176), Expect = 3e-37
Identities = 129/156 (83%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| | ||| |||| |||||
Sbjct 356 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 415
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
|| || ||||| ||| |||||||||| ||||||||| |||||| | | |||||||
Sbjct 416 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 475
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | | ||| ||||||| ||||||||||||
Sbjct 476 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 511
>seq2682
Length=265177
Score = 149 bits (164), Expect = 6e-34
Identities = 126/155 (81%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||
Sbjct 13108 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATACCCTGGTTTCCCACCTGC 13167
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
|||| ||||| ||||||||||||||| |||| | | |||||||| | |||| | ||
Sbjct 13168 TCGACCCGTCGGTCTCGCAGTCAAGCCTGCTTGTACTATTGCACTCCACACACGGTTACC 13227
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| |||| | ||| |||||| | |||||||||
Sbjct 13228 AAGCGTGTTGAGCAGACCTTTGGAAGCCTCCGTTA 13262
>seq1010
Length=5412
Score = 138 bits (152), Expect = 1e-30
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 8 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 67
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||| ||||||||||| || ||||||||||||||||| | |||| ||
Sbjct 68 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACCGATTTC 127
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||| ||| || |||||||||
Sbjct 128 CGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTA 163
>seq962
Length=5977
Score = 131 bits (144), Expect = 2e-28
Identities = 125/158 (79%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 1029 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1088
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCA--CTAACCTCACGATG 141
||||| |||| ||||||||||| || ||||||||||||||| ||||| | || |
Sbjct 1089 CTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTAACAGC-CGGTT 1147
Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||| |||| | ||| ||||||| || |||||||||
Sbjct 1148 TCCAACCGGCCTGAGCCAACCTTCGCGCGCCTCCGTTA 1185
>seq6592
Length=1011
Score = 122 bits (134), Expect = 8e-26
Identities = 121/156 (78%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||||| | ||||||||||||||| | || |||||| ||||
Sbjct 20 GTTGAGCGATGGCCCTTCCATTCGGTACCACCGGATCACTAAGTCCGACTTTCGTCCCTG 79
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || |||||||||||||| | |||||| ||||||| | | |||| ||
Sbjct 80 CTCGACTTGTAGGTCTCGCAGTCAAGC--TCCTATGCCTTTGCACTCTGCGCGCGATTTC 137
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| |||| | | || ||||| | || |||||||||
Sbjct 138 CAACCGCGCTGAGGGAACCTTAGAGCGCCTCCGTTA 173
>seq949
Length=6172
Score = 120 bits (132), Expect = 3e-25
Identities = 122/157 (78%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| |||||||||||||||||||| || |||||| ||||
Sbjct 697 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGA 756
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATGT 142
|||| || |||| ||||||||| ||||||||| |||||||| |||| ||| |
Sbjct 757 TCGACTTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT--CCTCATACGGTTA 814
Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| | ||| | |||| ||||| | |||||||||
Sbjct 815 CCAAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTA 851
>seq5365
Length=1235
Score = 78.8 bits (86), Expect = 9e-13
Identities = 111/156 (71%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||| |||||| ||| ||||||||||| || |||||| ||||
Sbjct 1028 GTTGAGCGACGGCGCTTCCACAAGCCACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 969
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||||| |||| ||||||||| ||| ||| || |||| | | | ||| |
Sbjct 968 CTCGACCCGTCGGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCAACACCTGATTGC 909
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | | || ||||| | || |||||||||
Sbjct 908 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 873
>seq4859
Length=1423
Score = 78.8 bits (86), Expect = 9e-13
Identities = 111/156 (71%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||| ||||| | ||| ||||||||||| || |||||| ||||
Sbjct 1142 GTTGAGCGACGGCCATTCCACAATGTACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 1083
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
|||||| ||| ||||| ||||||||| ||| ||| || |||| | | ||| |
Sbjct 1082 CTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGATTGC 1023
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | | || ||||| | || |||||||||
Sbjct 1022 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 987
>seq2403
Length=69003
Score = 78.8 bits (86), Expect = 9e-13
Identities = 111/156 (71%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| |||| ||||| | ||| ||||||||||| || |||||| ||||
Sbjct 9020 GTTGAGCGACGGCCATTCCACAATGTACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 8961
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
|||||| ||| ||||| ||||||||| ||| ||| || |||| | | ||| |
Sbjct 8960 CTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGATTGC 8901
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | | || ||||| | || |||||||||
Sbjct 8900 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 8865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473568466676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |