Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq1316 178 1e-42 seq6569 159 3e-37 seq2682 149 6e-34 seq1010 138 1e-30 seq962 131 2e-28 seq6592 122 8e-26 seq949 120 3e-25 seq5365 78.8 9e-13 seq4859 78.8 9e-13 seq2403 78.8 9e-13 >seq1316 Length=3583 Score = 178 bits (196), Expect = 1e-42 Identities = 133/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 3090 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 3031 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 3030 CTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 2971 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 2970 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 2935 >seq6569 Length=1015 Score = 159 bits (176), Expect = 3e-37 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||| Sbjct 356 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 415 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || ||||| ||| |||||||||| ||||||||| |||||| | | ||||||| Sbjct 416 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 475 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | | ||| ||||||| |||||||||||| Sbjct 476 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 511 >seq2682 Length=265177 Score = 149 bits (164), Expect = 6e-34 Identities = 126/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||||| Sbjct 13108 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATACCCTGGTTTCCCACCTGC 13167 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| ||||| ||||||||||||||| |||| | | |||||||| | |||| | || Sbjct 13168 TCGACCCGTCGGTCTCGCAGTCAAGCCTGCTTGTACTATTGCACTCCACACACGGTTACC 13227 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | ||| |||||| | ||||||||| Sbjct 13228 AAGCGTGTTGAGCAGACCTTTGGAAGCCTCCGTTA 13262 >seq1010 Length=5412 Score = 138 bits (152), Expect = 1e-30 Identities = 124/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 8 GTTGAGCGATGGCCCTTCCACACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 67 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| | |||| || Sbjct 68 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACCGATTTC 127 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||| ||| || ||||||||| Sbjct 128 CGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTA 163 >seq962 Length=5977 Score = 131 bits (144), Expect = 2e-28 Identities = 125/158 (79%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 1029 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1088 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCA--CTAACCTCACGATG 141 ||||| |||| ||||||||||| || ||||||||||||||| ||||| | || | Sbjct 1089 CTCGACTTGTCAGTCTCGCAGTCAGGCTGGCTTATGCCATTGCACTCTAACAGC-CGGTT 1147 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| |||| | ||| ||||||| || ||||||||| Sbjct 1148 TCCAACCGGCCTGAGCCAACCTTCGCGCGCCTCCGTTA 1185 >seq6592 Length=1011 Score = 122 bits (134), Expect = 8e-26 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||| | ||||||||||||||| | || |||||| |||| Sbjct 20 GTTGAGCGATGGCCCTTCCATTCGGTACCACCGGATCACTAAGTCCGACTTTCGTCCCTG 79 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| | |||||| ||||||| | | |||| || Sbjct 80 CTCGACTTGTAGGTCTCGCAGTCAAGC--TCCTATGCCTTTGCACTCTGCGCGCGATTTC 137 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | | || ||||| | || ||||||||| Sbjct 138 CAACCGCGCTGAGGGAACCTTAGAGCGCCTCCGTTA 173 >seq949 Length=6172 Score = 120 bits (132), Expect = 3e-25 Identities = 122/157 (78%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| Sbjct 697 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGA 756 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATGT 142 |||| || |||| ||||||||| ||||||||| |||||||| |||| ||| | Sbjct 757 TCGACTTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT--CCTCATACGGTTA 814 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | ||| | |||| ||||| | ||||||||| Sbjct 815 CCAAGCGTATTGAGCTTACCTTTGAAAGCCTCCGTTA 851 >seq5365 Length=1235 Score = 78.8 bits (86), Expect = 9e-13 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||| |||||| ||| ||||||||||| || |||||| |||| Sbjct 1028 GTTGAGCGACGGCGCTTCCACAAGCCACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 969 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||||| |||| ||||||||| ||| ||| || |||| | | | ||| | Sbjct 968 CTCGACCCGTCGGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCAACACCTGATTGC 909 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 908 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 873 >seq4859 Length=1423 Score = 78.8 bits (86), Expect = 9e-13 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||| ||||| | ||| ||||||||||| || |||||| |||| Sbjct 1142 GTTGAGCGACGGCCATTCCACAATGTACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 1083 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| ||| ||||| ||||||||| ||| ||| || |||| | | ||| | Sbjct 1082 CTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGATTGC 1023 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 1022 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 987 >seq2403 Length=69003 Score = 78.8 bits (86), Expect = 9e-13 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||| ||||| | ||| ||||||||||| || |||||| |||| Sbjct 9020 GTTGAGCGACGGCCATTCCACAATGTACCGCCGGATCACTAGTCCCGACTTTCGTCCCTG 8961 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| ||| ||||| ||||||||| ||| ||| || |||| | | ||| | Sbjct 8960 CTCGAGATGTCTCTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGATTGC 8901 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 8900 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 8865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473568466676