Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2403 342 8e-92 seq962 307 2e-81 seq949 307 2e-81 seq6569 288 2e-75 seq4859 282 7e-74 seq1316 271 1e-70 seq5365 197 2e-48 seq793 82.4 1e-13 >seq2403 Length=69003 Score = 342 bits (378), Expect = 8e-92 Identities = 236/267 (88%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| |||||||||| |||||| ||||||| ||| ||| ||||| |||| |||| Sbjct 9360 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCATCCGAACGTAGCTAATCAGCGGTGCA 9301 Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128 |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 9300 CTTGGCAGTACAACTGACACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAAGGAC 9241 Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 ||| | ||||||||||||| ||| | | |||||||||||||||||||||| |||||||| Sbjct 9240 AGCCCTTCTCAAATTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTC 9181 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 | |||||||||||||| || ||||||||||||||||||||||||||||||||||||| || Sbjct 9180 TAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCCA 9121 Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||||||||| Sbjct 9120 GCCCCAGGATGCGACGAGCCGACATCG 9094 >seq962 Length=5977 Score = 307 bits (340), Expect = 2e-81 Identities = 234/275 (85%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| ||||||| |||| || ||||| ||| Sbjct 682 CGAGGGAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCATACATAGCTACCCT 741 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 ||| || |||||| || || ||| |||||||||| ||| || ||||||||||||||| Sbjct 742 GCTGCGCCGTTGGCACGACGACAGGTACACCAGAGGTATGTTCAACCCGGTCCTCTCGTA 801 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || || ||||||||||||||| ||||||||| | |||||||||| |||||||||| Sbjct 802 CTAGGGTCAACTCCTCTCAAATTTCG-ACGCCCACGGCAGATAGGGACCAAACTGTCTCG 860 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||| Sbjct 861 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGGAC 920 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| || |||||||||||| Sbjct 921 CTGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 955 >seq949 Length=6172 Score = 307 bits (340), Expect = 2e-81 Identities = 227/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| | Sbjct 358 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 417 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| ||| Sbjct 418 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 477 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | || |||||| |||| |||||||| || |||||||||||||||||||| |||||||||| Sbjct 478 CCCCACTCAAAATTCCAACGCCCACAACAGATAGGGACCGAACTGTCTCACGACGTTCTG 537 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |||| Sbjct 538 AACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 597 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 598 CCCAGGATGTGACGAGCCGACATCG 622 >seq6569 Length=1015 Score = 288 bits (318), Expect = 2e-75 Identities = 229/274 (84%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| | Sbjct 10 GAGGCGCGCTTCCCGCTTAGATGC-TTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 68 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 69 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 128 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| | Sbjct 129 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 188 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||| Sbjct 189 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 248 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || |||||||||||| Sbjct 249 GACTACAGCCCCAGGATGTGATGAGCCGACATCG 282 >seq4859 Length=1423 Score = 282 bits (312), Expect = 7e-74 Identities = 185/204 (91%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1419 GGCAGTACAACTGACACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAAGGACAGC 1360 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 | ||||||||||||| ||| | | |||||||||||||||||||||| ||||||||| | Sbjct 1359 CCTTCTCAAATTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTCTAA 1300 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1299 ACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCCAGCC 1240 Query 252 CCAGGATGAGACGAGCCGACATCG 275 |||||||| |||||| |||||||| Sbjct 1239 CCAGGATGCGACGAGACGACATCG 1216 >seq1316 Length=3583 Score = 271 bits (300), Expect = 1e-70 Identities = 216/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| ||||||||| ||| || |||| |||| Sbjct 3423 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGCAATGCCACTGGCG 3364 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| || Sbjct 3363 TGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 3304 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||| ||||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 3303 TTCAAATTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 3244 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 3243 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 3184 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 3183 GATGTGATGAGCCGACATCG 3164 >seq5365 Length=1235 Score = 197 bits (218), Expect = 2e-48 Identities = 124/134 (93%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142 TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG 201 |||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1235 TTTCCTACGCGCACAGCGGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCG 1176 Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct 1175 CGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGACTCCAGCCCCAGGATGCG 1116 Query 262 ACGAGCCGACATCG 275 |||||||||||||| Sbjct 1115 ACGAGCCGACATCG 1102 >seq793 Length=161185 Score = 82.4 bits (90), Expect = 1e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| |||||| ||| ||| || ||||||||||| ||||||||||||||||| | || Sbjct 113337 ACGTTCTAAACCCAACTCACGTACCGCTTTAATGGGCAAACAGCCCAACCCTTGGAATCT 113278 Query 243 ACTTCAGCCCCAGGATGAGA 262 ||| | |||||||| || Sbjct 113277 TCTTATTCTCCAGGATGCGA 113258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780748012628