Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq2403 342 8e-92
seq962 307 2e-81
seq949 307 2e-81
seq6569 288 2e-75
seq4859 282 7e-74
seq1316 271 1e-70
seq5365 197 2e-48
seq793 82.4 1e-13
>seq2403
Length=69003
Score = 342 bits (378), Expect = 8e-92
Identities = 236/267 (88%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68
||||| |||||||||| |||||| ||||||| ||| ||| ||||| |||| ||||
Sbjct 9360 GCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCATCCGAACGTAGCTAATCAGCGGTGCA 9301
Query 69 CTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGAC 128
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 9300 CTTGGCAGTACAACTGACACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAAGGAC 9241
Query 129 AGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188
||| | ||||||||||||| ||| | | |||||||||||||||||||||| ||||||||
Sbjct 9240 AGCCCTTCTCAAATTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTC 9181
Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 9180 TAAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCCA 9121
Query 249 GCCCCAGGATGAGACGAGCCGACATCG 275
||||||||||| |||||||||||||||
Sbjct 9120 GCCCCAGGATGCGACGAGCCGACATCG 9094
>seq962
Length=5977
Score = 307 bits (340), Expect = 2e-81
Identities = 234/275 (85%), Gaps = 1/275 (0%)
Strand=Plus/Plus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
||||| |||||| |||||||||| |||||| ||||||| |||| || ||||| |||
Sbjct 682 CGAGGGAGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCATACATAGCTACCCT 741
Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120
||| || |||||| || || ||| |||||||||| ||| || |||||||||||||||
Sbjct 742 GCTGCGCCGTTGGCACGACGACAGGTACACCAGAGGTATGTTCAACCCGGTCCTCTCGTA 801
Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180
||| || || ||||||||||||||| ||||||||| | |||||||||| ||||||||||
Sbjct 802 CTAGGGTCAACTCCTCTCAAATTTCG-ACGCCCACGGCAGATAGGGACCAAACTGTCTCG 860
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
|||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||
Sbjct 861 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGGAC 920
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| || ||||||||||||| || ||||||||||||
Sbjct 921 CTGCTCCAGCCCCAGGATGTGATGAGCCGACATCG 955
>seq949
Length=6172
Score = 307 bits (340), Expect = 2e-81
Identities = 227/265 (86%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| ||||||||| |||||| |||||| |||| | | ||||| | | || |||| |
Sbjct 358 TTCGCACTTAGATGCTTTCAGCGCTTATCTATTCCCAGCGTAGCTACTCTGCAATGCCCC 417
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
|||| | ||||| | | ||| ||||| | ||||| ||||||||||||||||||||| |||
Sbjct 418 TGGCGGAACAACAGATTCACTAGAGGCTAGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 477
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
| || |||||| |||| |||||||| || |||||||||||||||||||| ||||||||||
Sbjct 478 CCCCACTCAAAATTCCAACGCCCACAACAGATAGGGACCGAACTGTCTCACGACGTTCTG 537
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || ||||
Sbjct 538 AACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGC 597
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| |||||||||||||||
Sbjct 598 CCCAGGATGTGACGAGCCGACATCG 622
>seq6569
Length=1015
Score = 288 bits (318), Expect = 2e-75
Identities = 229/274 (84%), Gaps = 1/274 (0%)
Strand=Plus/Plus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | ||||| |||||||||| |||||| ||||| ||||| ||| ||||| ||| |
Sbjct 10 GAGGCGCGCTTCCCGCTTAGATGC-TTCAGCGGTTATCGCTTCCGAACATAGCTACCCGG 68
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| |||| |||| ||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 69 CAATGCCACTGGCGTGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTAC 128
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | |||| |||||||||| ||| ||||||| | | |||||||||||||||||||| |
Sbjct 129 TAGGAGCAGCCCCTCTCAAATCTCCAACGCCCATGGCAGATAGGGACCGAACTGTCTCAC 188
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||
Sbjct 189 GACGTTCTGAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACC 248
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| ||||||||||||| || ||||||||||||
Sbjct 249 GACTACAGCCCCAGGATGTGATGAGCCGACATCG 282
>seq4859
Length=1423
Score = 282 bits (312), Expect = 7e-74
Identities = 185/204 (91%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131
||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1419 GGCAGTACAACTGACACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAAGGACAGC 1360
Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191
| ||||||||||||| ||| | | |||||||||||||||||||||| ||||||||| |
Sbjct 1359 CCTTCTCAAATTTCCTGCGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTTCTAA 1300
Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1299 ACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTCCAGCC 1240
Query 252 CCAGGATGAGACGAGCCGACATCG 275
|||||||| |||||| ||||||||
Sbjct 1239 CCAGGATGCGACGAGACGACATCG 1216
>seq1316
Length=3583
Score = 271 bits (300), Expect = 1e-70
Identities = 216/260 (83%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| ||||| ||||||||| ||| || |||| ||||
Sbjct 3423 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGAACTTAGCTACCCGGCAATGCCACTGGCG 3364
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| ||
Sbjct 3363 TGACAACCGGTACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 3304
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
|||||||||| ||||||||| | |||||||||| ||||||||| ||||||| | |||||
Sbjct 3303 TTCAAATTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 3244
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||| ||| || |||||| ||||||||||| |||||||||||| || |||||||||
Sbjct 3243 AGCTCACGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 3184
Query 256 GATGAGACGAGCCGACATCG 275
|||| || ||||||||||||
Sbjct 3183 GATGTGATGAGCCGACATCG 3164
>seq5365
Length=1235
Score = 197 bits (218), Expect = 2e-48
Identities = 124/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 142 TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG 201
|||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1235 TTTCCTACGCGCACAGCGGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCG 1176
Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261
||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1175 CGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCGACTCCAGCCCCAGGATGCG 1116
Query 262 ACGAGCCGACATCG 275
||||||||||||||
Sbjct 1115 ACGAGCCGACATCG 1102
>seq793
Length=161185
Score = 82.4 bits (90), Expect = 1e-13
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
||||||| |||||| ||| ||| || ||||||||||| ||||||||||||||||| | ||
Sbjct 113337 ACGTTCTAAACCCAACTCACGTACCGCTTTAATGGGCAAACAGCCCAACCCTTGGAATCT 113278
Query 243 ACTTCAGCCCCAGGATGAGA 262
||| | |||||||| ||
Sbjct 113277 TCTTATTCTCCAGGATGCGA 113258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780748012628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |