Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq6190 441 2e-121 seq6661 352 7e-95 seq1010 277 4e-72 seq6110 268 2e-69 seq962 264 3e-68 seq1489 235 1e-59 seq2403 230 6e-58 seq949 212 2e-52 seq2682 203 8e-50 seq2882 84.2 5e-14 >seq6190 Length=1069 Score = 441 bits (488), Expect = 2e-121 Identities = 350/415 (84%), Gaps = 8/415 (2%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |||| Sbjct 82 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 141 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 201 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||| | Sbjct 202 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 261 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || || ||||| ||||| | |||||||||||||||| || Sbjct 262 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 321 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | |||| |||||||||||||| | |||| | ||| |||||| | | | Sbjct 322 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTTCCTTTCGAAACGTTGTCCCCCACTACC 380 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||| || ||||||||||||||||||| | | | || |||||||| || Sbjct 381 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGC---TGAATCCAGGAGCAAGCTCCT 437 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 --CTCAT-CCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 489 >seq6661 Length=1004 Score = 352 bits (390), Expect = 7e-95 Identities = 325/411 (79%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| Sbjct 104 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGCTTGCGCCCAT 163 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 223 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| ||||| |||| ||| |||| ||||||| || Sbjct 224 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGATGCCTTGGTAGGCCTTTACCCCACC 283 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||| || |||| | | |||||| |||| Sbjct 284 AACTAGCTAATCAGATATCGGCCGCTCCAGGAGCATGAGGTCTTGCGATCCCCCACTTTC 343 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | || |||||||||||||| |||| |||||||||| | | || Sbjct 344 ATCCTTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCTTGGGT 403 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | | ||||||||||||| ||||||||| | || || | ||| | Sbjct 404 ACGTTCCGATATATTACTCACCCGTTCGCCACTCG-CCGC-------CAGGTTGCCCCGC 455 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | ||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 456 GCTGCCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 506 >seq1010 Length=5412 Score = 277 bits (306), Expect = 4e-72 Identities = 177/193 (92%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 5210 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 5269 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 5270 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 5329 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||| ||||||| || Sbjct 5330 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCCACC 5389 Query 184 AACTAGCTAATCC 196 ||||||||||||| Sbjct 5390 AACTAGCTAATCC 5402 >seq6110 Length=1082 Score = 268 bits (296), Expect = 2e-69 Identities = 304/410 (74%), Gaps = 32/410 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 401 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 460 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 461 GCGCAAGATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 520 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| |||||| |||| |||| ||| ||||| | ||| Sbjct 521 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTAGCCTTGGTGAGCCTTTACCTCACCA 580 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| ||| || | || | || | ||| | || Sbjct 581 ACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AATCTTTCCCCCGAAGG 634 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||| | || ||| |||| Sbjct 635 GC-----AC---ATCCGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGAACCAAAGGGCA 686 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| |||||||||||||||||||| || ||||| | Sbjct 687 CGTTCCCACGTGTTACTCACCCGTCCGCCACTAATC-CCGAAGGA--------------- 730 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 731 --TCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 778 >seq962 Length=5977 Score = 264 bits (292), Expect = 3e-68 Identities = 304/411 (74%), Gaps = 30/411 (7%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| | ||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 4874 CTTTACAACCCTAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 4933 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 4934 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 4993 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 4994 TGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCGTTACCTCACC 5053 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | ||| || || | ||| || ||||| Sbjct 5054 AACTAGCTAATCAGACGCGGG-----CCAATCTT--TCGGCGATAA-------ATCTTTC 5099 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | | | |||| |||||||||| |||||| ||| | || ||| ||| Sbjct 5100 CCCGTAAGGGCTTATCCGGTATTAGCACAAGTTTCCCTGTGTTGTTCCGAACCAAAAGGT 5159 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||||| | ||||||||||||| ||| || || | | || || Sbjct 5160 ATGTTCCCACGCGTTACTCACCCGTCTGCCGCT-------GACGTA---------TTGCT 5203 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 5204 ACGCCCGCTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGCTCTGAG 5254 >seq1489 Length=2939 Score = 235 bits (260), Expect = 1e-59 Identities = 166/190 (87%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 209 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTCCGCCCATT 150 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 149 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 90 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| |||| |||||||| || |||| ||||||||| ||| |||||||||||| ||| Sbjct 89 GGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTAGGCCATTACCCCACCA 30 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 29 ACAAGCTGAT 20 >seq2403 Length=69003 Score = 230 bits (254), Expect = 6e-58 Identities = 165/190 (87%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | |||||||||||||| |||||||| Sbjct 3013 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTCGCTGCATCAGGCTTTCGCCCATT 2954 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 2953 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 2894 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| |||| |||||||| || |||| ||||||||| |||| ||||||||| | ||| Sbjct 2893 GGCCGGTCGCCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCA 2834 Query 185 ACTAGCTAAT 194 || |||| || Sbjct 2833 ACAAGCTGAT 2824 >seq949 Length=6172 Score = 212 bits (234), Expect = 2e-52 Identities = 163/192 (85%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||||||||||||| | ||||||||||||||| |||| ||||| |||| Sbjct 5897 TTTACAACCCAGAAGGCCTTCTTCCTGCACGCGGCATGGCTGGTTCAGACTTGCATCCAT 5956 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 5957 TGACCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 6016 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| | ||| |||| |||||| ||||| ||||||| || || Sbjct 6017 TGGGGGATCAACCTCTCAGTTCCCCTACTGATCATCGCCTTGGTGGTCCATTACACCACC 6076 Query 184 AACTAGCTAATC 195 |||||||||||| Sbjct 6077 AACTAGCTAATC 6088 >seq2682 Length=265177 Score = 203 bits (224), Expect = 8e-50 Identities = 161/192 (84%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 5 TTTACAACCC-GAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| || ||||||| || ||||||||||||||| |||| ||||| |||| Sbjct 16592 TTTACAACCCTGAGGGCCTTCATCCGGCACGCGGCATGGCTGGGTCAGACTTGCATCCAT 16651 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| |||||||||||||||||||||| || |||| ||||||| || ||| Sbjct 16652 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCGGGCCCGTATCTCAGTGCCCGTG 16711 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||| | ||| |||||||| | ||| ||||||||||| |||||||| |||||||||| Sbjct 16712 TGGGGGATCAACCTCTCAGCTCCCCTATCGATCGTCGCCTTGGTGGGCCGTTACCCCGCC 16771 Query 184 AACTAGCTAATC 195 |||||||||||| Sbjct 16772 AACTAGCTAATC 16783 >seq2882 Length=47691 Score = 84.2 bits (92), Expect = 5e-14 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| ||| || ||||| || | |||| | || ||| ||||| || | |||||| Sbjct 44537 TTTACAATCCGCAGACCTTCATCCTTCACGTAGTATCGCTCGTTCAGGGTTTCCCCCATT 44596 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 | |||||||||||||||||||||||| |||||| |||||| Sbjct 44597 ACG-AATATTCCCCACTGCTGCCTCCCGAAGGAGTAGGGACCG 44638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222315984448