Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq962 401 2e-109
seq1010 399 7e-109
seq6110 392 1e-106
seq2403 390 3e-106
seq1489 361 2e-97
seq6661 295 2e-77
seq949 279 2e-72
seq2682 253 6e-65
seq6190 244 3e-62
seq6253 127 6e-27
seq2882 82.4 2e-13
>seq962
Length=5977
Score = 401 bits (444), Expect = 2e-109
Identities = 294/338 (87%), Gaps = 3/338 (1%)
Strand=Plus/Minus
Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211
||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 5080 GATTGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 5021
Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271
|||| | |||||||| ||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 5020 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 4961
Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||||
Sbjct 4960 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 4901
Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391
|| |||||||||| | |||| |||||||||| | | |||||||||| |||||||
Sbjct 4900 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCT-TTGTGCGGGAAGATAATAACGGTACCGC 4842
Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451
| || ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 4841 AAGAATAAG-CCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 4783
Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
| |||||| ||| |||||||| ||||||||||| ||
Sbjct 4782 TGCTCGGAATCACT-GGGCGTAAGGGGTGCGTAGGCGG 4746
>seq1010
Length=5412
Score = 399 bits (442), Expect = 7e-109
Identities = 295/343 (86%), Gaps = 1/343 (0%)
Strand=Plus/Minus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| |
Sbjct 5410 CCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCCATAGCTG 5351
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
|||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||
Sbjct 5350 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 5291
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337
||||||||||||||||| ||||||||| ||||||||| |||| | |||||||||| |||
Sbjct 5290 AGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGAGTGAT 5231
Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397
||||||||| |||| |||||||||| || | |||||||||||||||| | || |
Sbjct 5230 GAAGGCCTTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATGACGGTAACCGGAGAAG 5171
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 5170 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCG 5111
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||||| |||||||||| | |||||| || | |||||||
Sbjct 5110 GAATTACT-GGGCGTAAAGCGCACGTAGGCGGATATTTAAGTC 5069
>seq6110
Length=1082
Score = 392 bits (434), Expect = 1e-106
Identities = 293/342 (86%), Gaps = 1/342 (0%)
Strand=Plus/Minus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||| |
Sbjct 600 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCTACGATCAGTAGCTG 541
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277
|||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||
Sbjct 540 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 481
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337
|||||| |||||| |||| |||||||| ||||||||| ||||| | ||||||||| |||
Sbjct 480 AGCAGTAGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 421
Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397
||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || |
Sbjct 420 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 361
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 360 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 301
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499
|||||||| |||||||||||| ||||||| || | ||||||
Sbjct 300 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACTGTTAAGT 260
>seq2403
Length=69003
Score = 390 bits (432), Expect = 3e-106
Identities = 305/363 (84%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202
||||| ||||| |||||| | || |||| |||||| |||||| |||| ||||||||
Sbjct 2799 GCGGTGAAGGATGAGCCCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACCAAGGC 2858
Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262
||||| ||||||| |||||||||| || |||||||| ||| |||||||||||| |||
Sbjct 2859 GACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAG 2918
Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2919 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGA 2978
Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA-----GAT 377
||||||||||| ||||| ||||||||||| ||||| |||| || || |||| ||
Sbjct 2979 CGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGAAGAAGCGAA 3038
Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437
| ||||||||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 3039 AGTGACGGTACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 3098
Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497
||||| || |||||| |||||||||| | |||||||||| | |||||| || || | |
Sbjct 3099 TAGGGCGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCAC 3157
Query 498 GTC 500
|||
Sbjct 3158 GTC 3160
>seq1489
Length=2939
Score = 361 bits (400), Expect = 2e-97
Identities = 289/347 (83%), Gaps = 6/347 (2%)
Strand=Plus/Plus
Query 151 GGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCA 210
|||| ||| |||| | || |||| |||||| ||||| ||| ||||||||||||||
Sbjct 3 GGATGGACTCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCGACGACGG 62
Query 211 GTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270
||||||| |||||||||| || |||||||| ||| |||||||||||| ||| ||||||||
Sbjct 63 GTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC 122
Query 271 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 123 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCGACGCCGCGT 182
Query 331 GAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-----TAATGACGG 385
||| ||||| ||||||||||| ||||| |||| || || ||| || | ||||||
Sbjct 183 GAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGCAAGTGACGG 242
Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445
||| || || ||||| ||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 243 TACCTGCAGAAGAAGCGCCGGCCAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGCGC 302
Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|||||| |||||| ||| | |||||||||| | |||||| || ||
Sbjct 303 GAGCGTTGTCCGGATTTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTT 348
>seq6661
Length=1004
Score = 295 bits (326), Expect = 2e-77
Identities = 240/298 (81%), Gaps = 25/298 (8%)
Strand=Plus/Minus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||||||| ||||| ||| ||||||||| ||||||||||| | ||||
Sbjct 298 TCTGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCATCGATCAGTAGCTGGTCTGA 239
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| || | |||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 179
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
||||||| ||| ||||||||| ||||||||| |||||| |||||||||| || ||||||
Sbjct 178 GGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 119
Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378
|||||||| |||||||||| | ||| |||||| ||
Sbjct 118 CTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGAAACGGGTGTGGCTAATATCTGCATCTA 59
Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436
|||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 58 ATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 1
>seq949
Length=6172
Score = 279 bits (308), Expect = 2e-72
Identities = 296/389 (76%), Gaps = 20/389 (5%)
Strand=Plus/Minus
Query 131 ATCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACG 190
|| ||| |||||| |||||||||| | || |||||||||||||||||| |||| |
Sbjct 6124 ATTAAAACTCCGGTGGTACAGGATGAGCATGCTTCTGATTAGCTAGTTGGTGGTGTAATG 6065
Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250
| |||||||||| ||||||||| || |||||||| ||||| ||||| ||| |||||
Sbjct 6064 GACCACCAAGGCGATGATCAGTAGGGGAACTGAGAGGTTGATCCCCCACACTGGCACTGA 6005
Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310
|| |||| ||| ||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 6004 GATACGGGCCAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGGTCAATGGATGCAAGT 5945
Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC-GGGTCGTAAA--GCTCTGTCC- 366
|||| |||| | |||||||| || |||||||||| |||| ||||| ||| | ||
Sbjct 5944 CTGAACCAGCCATGCCGCGTGCAGGAAGAAGGCCTTCTGGGTTGTAAACTGCTTTTGCCA 5885
Query 367 ------TCAAGGAAGAT---------AATGACGGTACTTGAGGAGGAAGCCCCGGCTAAC 411
|| || || | ||| ||||| || || ||||| ||||||||
Sbjct 5884 GGGGATAAAACGAGCATGCGTGCTTAATTGAAGGTACCTGGTGAATAAGCCACGGCTAAC 5825
Query 412 TACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCG 471
|||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | |||
Sbjct 5824 TACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGATTTA-TTGGGTT 5766
Query 472 TAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||||||||||||||| || | ||||||
Sbjct 5765 TAAAGGGTGCGTAGGCGGCTCTATAAGTC 5737
>seq2682
Length=265177
Score = 253 bits (280), Expect = 6e-65
Identities = 271/360 (75%), Gaps = 21/360 (6%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|||| |||||||||||||| ||||||||| ||||||||||||||| ||| || |
Sbjct 16789 GCGTTCGATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATCGATAGGGGAGC 16730
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||||| ||||| ||||| || ||||||| |||| || ||||||||||||||||||
Sbjct 16729 TGAGAGGTTGATCCCCCACACGGGCACTGAGATACGGGCCCGACTCCTACGGGAGGCAGC 16670
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
||| |||||||||| |||||| ||| |||| |||| | |||||||| ||||||
Sbjct 16669 AGTAGGGAATATTGGGCAATGGATGCAAGTCTGACCCAGCCATGCCGCGTGCCGGATGAA 16610
Query 341 GGCCTTC-GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA-------------------T 380
|||| || |||| ||||| || | | |||||| | |
Sbjct 16609 GGCCCTCAGGGTTGTAAACGGCTTTTATTCGGGAAGAAGAGCAGGGATGCGTCCTTGTGT 16550
Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440
|||||||| | || |||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 16549 GACGGTACCGAATGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 16490
Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|| || |||||| |||||| ||| | ||| |||||||||||||||||| || |||||||
Sbjct 16489 GGTGCGAGCGTTGTCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGTGGCTTTTTAAGTC 16431
>seq6190
Length=1069
Score = 244 bits (270), Expect = 3e-62
Identities = 174/200 (87%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222
||| ||||||||||||||| |||||| |||| ||||||||||||||| ||| | | |||
Sbjct 280 GTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 221
Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282
||||| ||||| | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 220 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 161
Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342
|||||||||||| ||||||||| |||||||||| |||| | |||||||| | || |||||
Sbjct 160 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 101
Query 343 CCTTCGGGTCGTAAAGCTCT 362
|||||| | ||||||| ||
Sbjct 100 TCTTCGGATTGTAAAGCACT 81
>seq6253
Length=1059
Score = 127 bits (140), Expect = 6e-27
Identities = 92/105 (88%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 446
|| ||| || |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1058 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 999
Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491
||||||| |||||||||| |||||||||| ||||| ||| ||||
Sbjct 998 AGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 955
>seq2882
Length=47691
Score = 82.4 bits (90), Expect = 2e-13
Identities = 85/110 (77%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314
|||||| |||||| |||||||||||||||||||||||| | |||||| ||| |||||
Sbjct 44638 CGGTCCCTACTCCTTCGGGAGGCAGCAGTGGGGAATATT-CGTAATGGGGGAAACCCTGA 44580
Query 315 TGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGT 364
||| | | ||||| |||||||| || ||| | ||||| |||||
Sbjct 44579 ACGAGCGATACTACGTGAAGGATGAAGGTCTGCGGATTGTAAACTTCTGT 44530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497497069952
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