Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq962 401 2e-109 seq1010 399 7e-109 seq6110 392 1e-106 seq2403 390 3e-106 seq1489 361 2e-97 seq6661 295 2e-77 seq949 279 2e-72 seq2682 253 6e-65 seq6190 244 3e-62 seq6253 127 6e-27 seq2882 82.4 2e-13 >seq962 Length=5977 Score = 401 bits (444), Expect = 2e-109 Identities = 294/338 (87%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 5080 GATTGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCAG 5021 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 5020 TAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACG 4961 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 4960 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 4901 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||| | |||| |||||||||| | | |||||||||| ||||||| Sbjct 4900 AGTGATGAAGGCCCTAGGGTTGTAAAGCTCT-TTGTGCGGGAAGATAATAACGGTACCGC 4842 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 | || ||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 4841 AAGAATAAG-CCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 4783 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 | |||||| ||| |||||||| ||||||||||| || Sbjct 4782 TGCTCGGAATCACT-GGGCGTAAGGGGTGCGTAGGCGG 4746 >seq1010 Length=5412 Score = 399 bits (442), Expect = 7e-109 Identities = 295/343 (86%), Gaps = 1/343 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| ||||||||||||||| ||||| ||| |||||||||||||||| |||| | Sbjct 5410 CCCGCGTTGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCCATAGCTG 5351 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 5350 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 5291 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| ||||||||| ||||||||| |||| | |||||||||| ||| Sbjct 5290 AGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGAGTGAT 5231 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||||||| |||| |||||||||| || | |||||||||||||||| | || | Sbjct 5230 GAAGGCCTTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATGACGGTAACCGGAGAAG 5171 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | || Sbjct 5170 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCG 5111 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||| | |||||| || | ||||||| Sbjct 5110 GAATTACT-GGGCGTAAAGCGCACGTAGGCGGATATTTAAGTC 5069 >seq6110 Length=1082 Score = 392 bits (434), Expect = 1e-106 Identities = 293/342 (86%), Gaps = 1/342 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||| | Sbjct 600 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCTACGATCAGTAGCTG 541 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||| ||||||||||||||| Sbjct 540 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 481 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 |||||| |||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 480 AGCAGTAGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 421 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 420 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 361 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 360 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 301 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||| |||||||||||| ||||||| || | |||||| Sbjct 300 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACTGTTAAGT 260 >seq2403 Length=69003 Score = 390 bits (432), Expect = 3e-106 Identities = 305/363 (84%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 143 GCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGC 202 ||||| ||||| |||||| | || |||| |||||| |||||| |||| |||||||| Sbjct 2799 GCGGTGAAGGATGAGCCCGCGGCCTATCAGCTTGTTGGTGAGGTAATGGCTCACCAAGGC 2858 Query 203 GACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 ||||| ||||||| |||||||||| || |||||||| ||| |||||||||||| ||| Sbjct 2859 GACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAG 2918 Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 2919 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGAAAGCCTGATGCAGCGA 2978 Query 323 CGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAA-----GAT 377 ||||||||||| ||||| ||||||||||| ||||| |||| || || |||| || Sbjct 2979 CGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGAAGAAGCGAA 3038 Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 | ||||||||| || || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 3039 AGTGACGGTACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 3098 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||||| || |||||| |||||||||| | |||||||||| | |||||| || || | | Sbjct 3099 TAGGGCGCAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCAC 3157 Query 498 GTC 500 ||| Sbjct 3158 GTC 3160 >seq1489 Length=2939 Score = 361 bits (400), Expect = 2e-97 Identities = 289/347 (83%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 151 GGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCA 210 |||| ||| |||| | || |||| |||||| ||||| ||| |||||||||||||| Sbjct 3 GGATGGACTCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCCTACCAAGGCGACGACGG 62 Query 211 GTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270 ||||||| |||||||||| || |||||||| ||| |||||||||||| ||| |||||||| Sbjct 63 GTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC 122 Query 271 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 123 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCGACGCCGCGT 182 Query 331 GAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-----TAATGACGG 385 ||| ||||| ||||||||||| ||||| |||| || || ||| || | |||||| Sbjct 183 GAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGCAAGTGACGG 242 Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 ||| || || ||||| ||||| ||||||||||||||||||||||||| |||||||| || Sbjct 243 TACCTGCAGAAGAAGCGCCGGCCAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGCGC 302 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||||| |||||| ||| | |||||||||| | |||||| || || Sbjct 303 GAGCGTTGTCCGGATTTA-TTGGGCGTAAAGAGCTCGTAGGCGGCTT 348 >seq6661 Length=1004 Score = 295 bits (326), Expect = 2e-77 Identities = 240/298 (81%), Gaps = 25/298 (8%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||||| ||| ||||||||| ||||||||||| | |||| Sbjct 298 TCTGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCATCGATCAGTAGCTGGTCTGA 239 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 238 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 179 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| ||||||||| ||||||||| |||||| |||||||||| || |||||| Sbjct 178 GGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 119 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378 |||||||| |||||||||| | ||| |||||| || Sbjct 118 CTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGAAACGGGTGTGGCTAATATCTGCATCTA 59 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| Sbjct 58 ATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 1 >seq949 Length=6172 Score = 279 bits (308), Expect = 2e-72 Identities = 296/389 (76%), Gaps = 20/389 (5%) Strand=Plus/Minus Query 131 ATCAAAGCTCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACG 190 || ||| |||||| |||||||||| | || |||||||||||||||||| |||| | Sbjct 6124 ATTAAAACTCCGGTGGTACAGGATGAGCATGCTTCTGATTAGCTAGTTGGTGGTGTAATG 6065 Query 191 GCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGA 250 | |||||||||| ||||||||| || |||||||| ||||| ||||| ||| ||||| Sbjct 6064 GACCACCAAGGCGATGATCAGTAGGGGAACTGAGAGGTTGATCCCCCACACTGGCACTGA 6005 Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 || |||| ||| ||||||||||||||||||||| |||||||||| |||||| ||| Sbjct 6004 GATACGGGCCAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGGTCAATGGATGCAAGT 5945 Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC-GGGTCGTAAA--GCTCTGTCC- 366 |||| |||| | |||||||| || |||||||||| |||| ||||| ||| | || Sbjct 5944 CTGAACCAGCCATGCCGCGTGCAGGAAGAAGGCCTTCTGGGTTGTAAACTGCTTTTGCCA 5885 Query 367 ------TCAAGGAAGAT---------AATGACGGTACTTGAGGAGGAAGCCCCGGCTAAC 411 || || || | ||| ||||| || || ||||| |||||||| Sbjct 5884 GGGGATAAAACGAGCATGCGTGCTTAATTGAAGGTACCTGGTGAATAAGCCACGGCTAAC 5825 Query 412 TACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCG 471 |||||||||||||||||||||||||||||| ||| |||||| |||||| ||| | ||| Sbjct 5824 TACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCGGATTTA-TTGGGTT 5766 Query 472 TAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||||||||| || | |||||| Sbjct 5765 TAAAGGGTGCGTAGGCGGCTCTATAAGTC 5737 >seq2682 Length=265177 Score = 253 bits (280), Expect = 6e-65 Identities = 271/360 (75%), Gaps = 21/360 (6%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||||||||||| ||||||||| ||||||||||||||| ||| || | Sbjct 16789 GCGTTCGATTAGCTAGTTGGCGGGGTAACGGCCCACCAAGGCGACGATCGATAGGGGAGC 16730 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| ||||| || ||||||| |||| || |||||||||||||||||| Sbjct 16729 TGAGAGGTTGATCCCCCACACGGGCACTGAGATACGGGCCCGACTCCTACGGGAGGCAGC 16670 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 ||| |||||||||| |||||| ||| |||| |||| | |||||||| |||||| Sbjct 16669 AGTAGGGAATATTGGGCAATGGATGCAAGTCTGACCCAGCCATGCCGCGTGCCGGATGAA 16610 Query 341 GGCCTTC-GGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA-------------------T 380 |||| || |||| ||||| || | | |||||| | | Sbjct 16609 GGCCCTCAGGGTTGTAAACGGCTTTTATTCGGGAAGAAGAGCAGGGATGCGTCCTTGTGT 16550 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 |||||||| | || |||| |||||||||| |||||||||||||||||||||||| || Sbjct 16549 GACGGTACCGAATGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAG 16490 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || || |||||| |||||| ||| | ||| |||||||||||||||||| || ||||||| Sbjct 16489 GGTGCGAGCGTTGTCCGGATTTA-TTGGGTTTAAAGGGTGCGTAGGTGGCTTTTTAAGTC 16431 >seq6190 Length=1069 Score = 244 bits (270), Expect = 3e-62 Identities = 174/200 (87%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| |||||| |||| ||||||||||||||| ||| | | ||| Sbjct 280 GTCGGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 221 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 220 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 161 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 160 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 101 Query 343 CCTTCGGGTCGTAAAGCTCT 362 |||||| | ||||||| || Sbjct 100 TCTTCGGATTGTAAAGCACT 81 >seq6253 Length=1059 Score = 127 bits (140), Expect = 6e-27 Identities = 92/105 (88%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 446 || ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1058 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 999 Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 998 AGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 955 >seq2882 Length=47691 Score = 82.4 bits (90), Expect = 2e-13 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 255 CGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 |||||| |||||| |||||||||||||||||||||||| | |||||| ||| ||||| Sbjct 44638 CGGTCCCTACTCCTTCGGGAGGCAGCAGTGGGGAATATT-CGTAATGGGGGAAACCCTGA 44580 Query 315 TGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGT 364 ||| | | ||||| |||||||| || ||| | ||||| ||||| Sbjct 44579 ACGAGCGATACTACGTGAAGGATGAAGGTCTGCGGATTGTAAACTTCTGT 44530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497497069952