Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1010 426 4e-117 seq6110 403 4e-110 seq2403 390 3e-106 seq1489 333 6e-89 seq6253 331 2e-88 seq949 295 2e-77 seq2682 259 1e-66 seq2000 208 2e-51 seq962 122 2e-25 >seq1010 Length=5412 Score = 426 bits (472), Expect = 4e-117 Identities = 336/400 (84%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 5174 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 5115 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||||||||||||||||| | |||||| || | ||||||||| ||||||| | Sbjct 5114 TTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGATATTTAAGTCAGGGGTGAAATCCC 5055 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||| |||| ||||| ||||| |||| || |||| | || || ||||| Sbjct 5054 GCAGCTCAACTCCGGAACTGCCTTTGATACTGGGTATCTTGAGTATGGAAGAGGTAAGTG 4995 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4994 GAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAGGAACACCAGTGGCGAAGGCG 4935 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 |||| |||| | | |||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4934 GCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGAT 4875 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| ||| |||||| | || | || | || Sbjct 4874 ACCCTGGTAGTCCACGCCGTAAACGATGAATGTTAGCCGTCGGGCAGTAT-ACTG-TTCG 4817 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| ||| ||||| ||||||||||| Sbjct 4816 GTGGCGCAGCTAACGCATTAAACATTCCGCCTGGGGAGTA 4777 >seq6110 Length=1082 Score = 403 bits (446), Expect = 4e-110 Identities = 295/343 (86%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 364 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 305 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||||| ||||||| || | |||||| ||||||||||| | Sbjct 304 CTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACTGTTAAGTTAGAGGTGAAAGCCC 245 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || | ||| ||||| |||| | || |||| | | || || | ||| Sbjct 244 AGGGCTCAACCTTGGAATTGCCTTTGATACTGGCAGTCTTGAGTACGGAAGAGGTATGTG 185 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 184 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 125 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | |||| | || |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 124 ACATACTGGTCCGTTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 65 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG 351 ||||||||||||||||||||||||||||| | |||| |||||| Sbjct 64 ACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGTTGTCGG 22 >seq2403 Length=69003 Score = 390 bits (432), Expect = 3e-106 Identities = 335/411 (82%), Gaps = 5/411 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| || || ||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 3047 TACCTGCAGAAGAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGC 3106 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||||| ||||||||||| | |||||| || || | | ||| || || Sbjct 3107 AAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCACGTCGGATGT 3166 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||||| | |||| ||||||||| |||| || || || | ||||||||| | ||| Sbjct 3167 GAAAGCCCGGGGCTTAACCCCGGGTCTGCATTCGATACGGGCAAGCTAGAGTGTGGTAGG 3226 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | ||||||||| |||||||||||||||||| |||||| |||||||||||| |||| Sbjct 3227 GGAGATCGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGGTGG 3286 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||||| | |||| | | |||||| |||||| |||||||||||||||| ||||| Sbjct 3287 CGAAGGCGGATCTCTGGGCCATTACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAG 3346 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-- 358 ||||||||||||||||||||||||||||||||| || ||||||||| || | ||| Sbjct 3347 GATTAGATACCCTGGTAGTCCACGCCGTAAACGGTGGGAACTAGGTGTTGGCG-ACATTC 3405 Query 359 -AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || | |||||||||||| |||||| ||||| || ||||||||||| Sbjct 3406 CACGT-CGTCGGTGCCGCAGCTAACGCATTAAGTGCCCCGCCTGGGGAGTA 3455 >seq1489 Length=2939 Score = 333 bits (368), Expect = 6e-89 Identities = 320/409 (78%), Gaps = 1/409 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| || || ||||| ||||| ||||||||||||||||||||||||| |||||||| || Sbjct 243 TACCTGCAGAAGAAGCGCCGGCCAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGCGC 302 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||| ||| ||||||||||| | |||||| || || | ||| | || Sbjct 303 GAGCGTTGTCCGGATTTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCGAATGT 362 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | |||||||| | | | ||| || || || | ||||||||| | | ||| Sbjct 363 GAAATCTCAGGGCTCAACTCTGACATTGCATTCGATACGGGCAGGCTAGAGTTCGGTAGG 422 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||||||| |||||||||||||||||| |||||| |||||||||||| ||| Sbjct 423 GGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGATGG 482 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||| | | |||| | | |||||| |||||| |||||||||||||||| ||||| Sbjct 483 CGAAGGCAGGTCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAG 542 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGC-ATA 359 ||||||||||||||||||||||||| ||||||| || |||||||| ||| | | | Sbjct 543 GATTAGATACCCTGGTAGTCCACGCTGTAAACGTTGGGCGCTAGGTGTGGGGACCCTCTC 602 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | | |||||||| |||||| |||| || ||||||||||| Sbjct 603 CGGGTTTCTGCGCCGCAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTA 651 >seq6253 Length=1059 Score = 331 bits (366), Expect = 2e-88 Identities = 322/410 (79%), Gaps = 7/410 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 || ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1058 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 999 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 ||||||| |||||||||||||||||||| ||||| ||| |||| ||| |||| ||| Sbjct 998 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTATGCAAGACAGATGTG 939 Query 122 AAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCA-GGGCTAGAGTGCAG--GA 178 ||| | ||||||||| || ||||| |||| |||||| ||||||||| | | || Sbjct 938 AAATCCCCGGGCTCAACCTGGGAACTGCATTTGTGACTGCATAGGCTAGAGTACGGCAGA 879 Query 179 GGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGT 238 |||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| | Sbjct 878 GGGGGA--TGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGAT 821 Query 239 GGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAAC 298 ||||||||| |||| | |||||| || | || |||||||||||||||||||| Sbjct 820 GGCGAAGGCAATCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 761 Query 299 AGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 |||||||||||||||||||||||||||| ||||||||| ||| | ||| ||| | | Sbjct 760 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGG--TCTT 703 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || | || || ||| ||||| |||| || ||||||||||| Sbjct 702 CACTGACTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTA 653 >seq949 Length=6172 Score = 295 bits (326), Expect = 2e-77 Identities = 308/400 (77%), Gaps = 12/400 (3%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct 5838 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCGAGCGTTGTCCG 5779 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTAT-- 130 || ||| |||| ||||||||||||||| || | |||||||| | ||||| ||| Sbjct 5778 GATTTATTGGGTTTAAAGGGTGCGTAGGCGGCTCTATAAGTCAGTGCTGAAA---TATCC 5722 Query 131 -GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||| |||| | | || |||| ||||||| ||| |||| || | || | || Sbjct 5721 CGGCTTAACCGGGAGGGTGGCATTGATACTGCAGAGCTTGAGTAAAGTTGAGGTGGGCGG 5662 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| ||||||||||||||||| ||||||| | ||||||| | |||||||| | Sbjct 5661 AATTGACGGTGTAGCGGTGAAATGCTTAGATATCGTCAAGAACACCGATTGCGAAGGCAG 5602 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || || || |||||||| ||||||| |||||| ||||||| |||||||||||||||| Sbjct 5601 CTCACTAAGCTTTAACTGACGCTGAGGCACGAAAGTGTGGGGATCAAACAGGATTAGATA 5542 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA-AGTGCTCCG 368 |||||||||||||| | ||||||| ||| |||| | ||| || | ||| | | || Sbjct 5541 CCCTGGTAGTCCACACTGTAAACGTTGATTACTCGCTGTTGGCG---ATACACAG--CCA 5487 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | ||| | || ||||||| ||||||||||||||| Sbjct 5486 GCGGCTAAGCGCAAGCGATAAGTAATCCACCTGGGGAGTA 5447 >seq2682 Length=265177 Score = 259 bits (286), Expect = 1e-66 Identities = 261/337 (77%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| |||| Sbjct 16532 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTGTCCG 16473 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||||||||||||| || ||||||||| ||||||| | | Sbjct 16472 GATTTATTGGGTTTAAAGGGTGCGTAGGTGGCTTTTTAAGTCAGTGGTGAAATACAGCCG 16413 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||| | ||| |||| |||| | ||| || | | ||| ||||| Sbjct 16412 CTCAACGGTTGAGGTGCCATTGATACTGAAAAGCTTGAAATAATTGGAGGCTGCCGGAAT 16353 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | ||||||||||||||||| ||||||| | ||||||| | |||||||| | | Sbjct 16352 GGATGGTGTAGCGGTGAAATGCATAGATATCATCCAGAACACCGATTGCGAAGGCAGGTG 16293 Query 253 GCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 ||| || || |||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 16292 GCTACGATTGGTT-TGACACTGAGGCACGAAAGCATGGGGAGCAAACAGGATTAGATACC 16234 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||||| || ||||||||||| ||| | ||| Sbjct 16233 CTGGTAGTCCATGCTGTAAACGATGAGGACTCGTTGT 16197 >seq2000 Length=1661 Score = 208 bits (230), Expect = 2e-51 Identities = 194/244 (80%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 |||||||| | || || ||||||||||| ||||||| |||||||||||||| || | Sbjct 1648 CTAGAGTGTGGTAGAGGGTAGTGGAATTCCCGGTGTAGCAGTGAAATGCGTAGAGATCGG 1589 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 |||||||| | |||||||||| ||| |||||| |||||||||||||| ||||||| Sbjct 1588 GAGGAACATCCATGGCGAAGGCAGCTACCTGGACCAACACTGACACTGAGGCACGAAAGC 1529 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | Sbjct 1528 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGA 1469 Query 346 TGTCGGGGCGCATAAGTGCTC-CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGG 404 ||| ||| ||| || | | || || ||| ||||| ||||| || ||||||| Sbjct 1468 TGT-TGGGTGCAATTTGGCACGCAGTATCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGG 1410 Query 405 AGTA 408 |||| Sbjct 1409 AGTA 1406 >seq962 Length=5977 Score = 122 bits (134), Expect = 2e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 17 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 76 ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 4832 CCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCGGAAT 4773 Query 77 TACTGGGCGTAAAGGGTGCGTAGGTGG 103 ||||||||||| ||||||||||| || Sbjct 4772 CACTGGGCGTAAGGGGTGCGTAGGCGG 4746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203117304064