Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq809 443 4e-122
seq2264 190 4e-46
seq722 179 7e-43
seq53 122 2e-25
>seq809
Length=160633
Score = 443 bits (490), Expect = 4e-122
Identities = 284/309 (92%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||||| | |||||||| | ||| ||||||||||
Sbjct 157088 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 157147
Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157148 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 157207
Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199
|||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| |||
Sbjct 157208 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 157265
Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 157266 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 157325
Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 157326 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 157385
Query 320 CCCTTTGTA 328
|||||||||
Sbjct 157386 CCCTTTGTA 157394
>seq2264
Length=278406
Score = 190 bits (210), Expect = 4e-46
Identities = 200/258 (78%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||||||
Sbjct 244753 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 244696
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||| || | || || | | ||
Sbjct 244695 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 244637
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| | ||||| | || ||| | || |||| | ||||| | |||||
Sbjct 244636 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 244578
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| |
Sbjct 244577 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 244518
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 244517 ACGTCCCTGCCCTTTGTA 244500
Score = 190 bits (210), Expect = 4e-46
Identities = 200/258 (78%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||||||
Sbjct 257454 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 257397
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||| || | || || | | ||
Sbjct 257396 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 257338
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| | ||||| | || ||| | || |||| | ||||| | |||||
Sbjct 257337 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 257279
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| |
Sbjct 257278 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 257219
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 257218 ACGTCCCTGCCCTTTGTA 257201
Score = 190 bits (210), Expect = 4e-46
Identities = 200/258 (78%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||||||
Sbjct 274650 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 274593
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||| || | || || | | ||
Sbjct 274592 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 274534
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||| |||| | ||||| | || ||| | || |||| | ||||| | |||||
Sbjct 274533 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 274475
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| |
Sbjct 274474 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 274415
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 274414 ACGTCCCTGCCCTTTGTA 274397
Score = 172 bits (190), Expect = 1e-40
Identities = 191/250 (76%), Gaps = 5/250 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||||||
Sbjct 255661 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 255604
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||| || | || | || | |
Sbjct 255603 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCA--GCGTGCTTGT 255546
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| ||| |||| | ||||| | || ||| | || |||| | ||||| | |||||
Sbjct 255545 CCTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 255486
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| |
Sbjct 255485 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 255426
Query 311 ACGTCCCTGC 320
|||||| |||
Sbjct 255425 ACGTCCTTGC 255416
Score = 132 bits (146), Expect = 9e-29
Identities = 153/201 (76%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
||||||||||||| | |||| | ||||| ||| || ||| ||||||||||||||||
Sbjct 254999 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 255056
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||| || | || | || | |
Sbjct 255057 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCA--GCGTGCTTGT 255114
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|||| ||| |||| | ||||| | || ||| | || |||| | ||||| | |||||
Sbjct 255115 CCTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 255174
Query 251 CAATTATTGCTCTTCAACGAG 271
||||||||| | | ||||||
Sbjct 255175 CAATTATTGTCCGTGAACGAG 255195
>seq722
Length=8459
Score = 179 bits (198), Expect = 7e-43
Identities = 173/220 (79%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 466 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACT 408
Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228
| || | || || | | || ||| ||| |||| | ||||| | || ||| | ||
Sbjct 407 GGCAAAATCAGCGTGCTTGTC--CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTG 350
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
|||| | ||||| | |||||||||||||| | | |||||||||| ||| ||| | ||
Sbjct 349 CCGTGATTGGGATCGGACATTGCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGC 290
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||||| | ||| ||| |||||||||||||||||||
Sbjct 289 GAGTCATCAACTCGCTCTGAATACGTCCCTGCCCTTTGTA 250
>seq53
Length=25752
Score = 122 bits (134), Expect = 2e-25
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||| | |||| ||||||||||||||||| || | || | | | ||
Sbjct 5848 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCATGCTTGTC 5789
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| ||| | || | ||||| || ||| | || |||| | ||||| | ||||
Sbjct 5788 --CTTCCCCGAATGGGGTTGGTAAATCGGTGAAAATTTGCCGTGATTGGGATCGGACATT 5731
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||||||| | | |||||||||| ||| ||| | ||| ||||| | | ||| |||
Sbjct 5730 GCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATAAACTCGCTCTGAA 5671
Query 310 TACGTCCCTGCCCTTTGTA 328
|||| | ||||||||||||
Sbjct 5670 TACGCCTCTGCCCTTTGTA 5652
Score = 122 bits (134), Expect = 2e-25
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||| | |||| ||||||||||||||||| || | || | | | ||
Sbjct 21283 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCATGCTTGTC 21224
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| ||| | || | ||||| || ||| | || |||| | ||||| | ||||
Sbjct 21223 --CTTCCCCGAATGGGGTTGGTAAATCGGTGAAAATTTGCCGTGATTGGGATCGGACATT 21166
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||||||| | | |||||||||| ||| ||| | ||| ||||| | | ||| |||
Sbjct 21165 GCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATAAACTCGCTCTGAA 21106
Query 310 TACGTCCCTGCCCTTTGTA 328
|||| | ||||||||||||
Sbjct 21105 TACGCCTCTGCCCTTTGTA 21087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947134898944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |