Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq809 443 4e-122 seq2264 190 4e-46 seq722 179 7e-43 seq53 122 2e-25 >seq809 Length=160633 Score = 443 bits (490), Expect = 4e-122 Identities = 284/309 (92%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 157088 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCTGGCTTCTTAG 157147 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157148 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 157207 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||| |||||| ||||| | | ||||| ||| Sbjct 157208 GATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTACTT--CCTTGTCCG 157265 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 157266 AAAGGTCCGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTATTG 157325 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 157326 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 157385 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 157386 CCCTTTGTA 157394 >seq2264 Length=278406 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 244753 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 244696 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || | || || | | || Sbjct 244695 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 244637 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| | ||||| | || ||| | || |||| | ||||| | ||||| Sbjct 244636 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 244578 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| | Sbjct 244577 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 244518 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 244517 ACGTCCCTGCCCTTTGTA 244500 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 257454 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 257397 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || | || || | | || Sbjct 257396 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 257338 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| | ||||| | || ||| | || |||| | ||||| | ||||| Sbjct 257337 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 257279 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| | Sbjct 257278 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 257219 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 257218 ACGTCCCTGCCCTTTGTA 257201 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 274650 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 274593 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || | || || | | || Sbjct 274592 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCGTGCTTGTC- 274534 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||| |||| | ||||| | || ||| | || |||| | ||||| | ||||| Sbjct 274533 -CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 274475 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| | Sbjct 274474 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 274415 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 274414 ACGTCCCTGCCCTTTGTA 274397 Score = 172 bits (190), Expect = 1e-40 Identities = 191/250 (76%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 255661 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 255604 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || | || | || | | Sbjct 255603 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCA--GCGTGCTTGT 255546 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||| |||| | ||||| | || ||| | || |||| | ||||| | ||||| Sbjct 255545 CCTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 255486 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| | | |||||||||| ||| ||| | ||| ||||||| | ||| ||| | Sbjct 255485 CAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATCAACTCGCTCTGAAT 255426 Query 311 ACGTCCCTGC 320 |||||| ||| Sbjct 255425 ACGTCCTTGC 255416 Score = 132 bits (146), Expect = 9e-29 Identities = 153/201 (76%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||| | |||| | ||||| ||| || ||| |||||||||||||||| Sbjct 254999 CTTCTTAGAGGGATTTTCGGTGTTCAGCCGCACGAAATT-GAG-CAATAACAGGTCTGTG 255056 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||| || | || | || | | Sbjct 255057 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCA--GCGTGCTTGT 255114 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| ||| |||| | ||||| | || ||| | || |||| | ||||| | ||||| Sbjct 255115 CCTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTGCCGTGATTGGGATCGGACATTG 255174 Query 251 CAATTATTGCTCTTCAACGAG 271 ||||||||| | | |||||| Sbjct 255175 CAATTATTGTCCGTGAACGAG 255195 >seq722 Length=8459 Score = 179 bits (198), Expect = 7e-43 Identities = 173/220 (79%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||| Sbjct 466 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACT 408 Query 169 GACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG 228 | || | || || | | || ||| ||| |||| | ||||| | || ||| | || Sbjct 407 GGCAAAATCAGCGTGCTTGTC--CTTCCCCGAAAGGGGTTGGTAAACCGGTGAAAATTTG 350 Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 |||| | ||||| | |||||||||||||| | | |||||||||| ||| ||| | || Sbjct 349 CCGTGATTGGGATCGGACATTGCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGC 290 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | ||| ||| ||||||||||||||||||| Sbjct 289 GAGTCATCAACTCGCTCTGAATACGTCCCTGCCCTTTGTA 250 >seq53 Length=25752 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||||||||||||||||| || | || | | | || Sbjct 5848 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCATGCTTGTC 5789 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| | || | ||||| || ||| | || |||| | ||||| | |||| Sbjct 5788 --CTTCCCCGAATGGGGTTGGTAAATCGGTGAAAATTTGCCGTGATTGGGATCGGACATT 5731 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||||||| | | |||||||||| ||| ||| | ||| ||||| | | ||| ||| Sbjct 5730 GCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATAAACTCGCTCTGAA 5671 Query 310 TACGTCCCTGCCCTTTGTA 328 |||| | |||||||||||| Sbjct 5670 TACGCCTCTGCCCTTTGTA 5652 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||| ||||||||||||||||| || | || | | | || Sbjct 21283 GATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGCAAAATCAGCATGCTTGTC 21224 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| ||| | || | ||||| || ||| | || |||| | ||||| | |||| Sbjct 21223 --CTTCCCCGAATGGGGTTGGTAAATCGGTGAAAATTTGCCGTGATTGGGATCGGACATT 21166 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||||||| | | |||||||||| ||| ||| | ||| ||||| | | ||| ||| Sbjct 21165 GCAATTATTGTCCGTGAACGAGGAATTCCTTGTAGGGGCGAGTCATAAACTCGCTCTGAA 21106 Query 310 TACGTCCCTGCCCTTTGTA 328 |||| | |||||||||||| Sbjct 21105 TACGCCTCTGCCCTTTGTA 21087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947134898944