Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1316 280 3e-73 seq2000 163 5e-38 seq2403 159 6e-37 seq2682 129 1e-27 seq962 123 5e-26 >seq1316 Length=3583 Score = 280 bits (310), Expect = 3e-73 Identities = 258/323 (80%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 580 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 639 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCG-- 118 |||| ||||||| ||||||| |||||||||| |||| ||||||||||||||||| Sbjct 640 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACT 699 Query 119 GCC-CTTTGGGTCATTGCATGCTGAATACATAGG-TATGCAAAGCGAACGCGGCGAACTG 176 || | || || | |||||||||||||| || |||||||| || |||||| Sbjct 700 GCAGCAATGCAGTATCCCTAGCTGAATACATAGGCTAGTGGAAGCGAACCGGGTGAACTG 759 Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 |||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||| Sbjct 760 AAACATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCG 819 Query 237 AAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAG 296 |||| ||| |||||| ||| ||| |||||| ||| |||||| | Sbjct 820 AAATCGGAAGAGCCTGCACGTTTTAGCATTCTTGATATCAGAACGGAATGGAAAGTCCGG 879 Query 297 CCATAGCGGGTGATAGCCCCGTA 319 ||||||||||||||||||||||| Sbjct 880 CCATAGCGGGTGATAGCCCCGTA 902 >seq2000 Length=1661 Score = 163 bits (180), Expect = 5e-38 Identities = 188/252 (75%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| ||||| ||||||| Sbjct 249 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATA 190 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||| ||| |||||| || || ||| ||| || |||||||||||||| | Sbjct 189 AGCGTCGGTGAGGTGGCAAACGACCTGCGACCCGGCGATCTCTGAATGGGGAAACCCACC 130 Query 121 CCTTTGGGTCA------TTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGA 172 | || | | | | || |||||| |||||| | |||||| || || Sbjct 129 ---TGGGATAACCCAGGTATCTTGACCTGAATCCATAGGGTCAAGAGGCGAACCAGGGGA 73 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| Sbjct 72 ACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCG 13 Query 233 AGCGAAATGGGA 244 |||||| |||| Sbjct 12 AGCGAACGGGGA 1 >seq2403 Length=69003 Score = 159 bits (176), Expect = 6e-37 Identities = 193/259 (75%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGG---CGATGAAGGACGTAGTAGCTTGCG 57 || || || ||||||||||||||| |||| ||||||||||||| | || || Sbjct 4432 AGGGCGCACGGTGGATGCCTTGGCAC---CAGGAACCGATGAAGGACGTGGGAGGCCACG 4488 Query 58 ATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| | ||||||| ||| || |||||||||| | ||||||||||||||||||| Sbjct 4489 ATAGTCCCCGGGGAGCTGTCAACCAAGCTTTGATCCGGGGGTTTCCGAATGGGGAAACCC 4548 Query 118 GGCCCTT----TGGG---TCATTGCATGCTGAATACATAGGTA-TGCAAAGCGAACGCGG 169 ||| | |||| ||| ||||||| ||||||| | || || |||||||| Sbjct 4549 GGCAGTCGTCATGGGCTGTCACCCGCTGCTGAACACATAGGCAGTGTGGAGGGAACGCGG 4608 Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 ||| |||||||||| |||| | ||||||| ||||| |||||| |||||| ||||||| Sbjct 4609 GGAAGTGAAACATCTCAGTACCCGCAGGAAGAGAAAACAACCGTGATTCCGGGAGTAGTG 4668 Query 230 GCGAGCGAAATGGGATGAG 248 |||||||||| ||||||| Sbjct 4669 GCGAGCGAAACCGGATGAG 4687 Score = 150 bits (166), Expect = 3e-34 Identities = 190/259 (73%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | |||||||| |||||| || ||||||||||||||| || ||||| | Sbjct 6668 AGGGCATACGGTGGATGTCTTGGCACCAGGAGCCGATGAAGGACGTAGGAGACTGCGAAA 6727 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || |||||| ||| | || ||||| |||||||||||||||||||||| Sbjct 6728 AGTCTAGGGGAGCTGTCAACCGAGCTGAGATCCTAGAATTTCCGAATGGGGAAACCCGGA 6787 Query 121 CC------TTTGGGTCATTGCATGC-TGAATACATAGG-TATGCAAAGCGAACGCGGCGA 172 || | ||||| ||| | |||| ||||||| |||| || |||||||| || Sbjct 6788 CCCAGTCATGTGGGTTCACCCATACCTGAACACATAGGGTATGTGGAGGGAACGCGGGGA 6847 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 | |||||||||| |||| | ||||||| ||||| |||||| |||||| |||||||||| Sbjct 6848 AGTGAAACATCTCAGTACCCGCAGGAAGAGAAAACAACCGTGATTCCGTGAGTAGTGGCG 6907 Query 233 AGCGAAATGGGATGAGCCT 251 ||||||| ||| ||| || Sbjct 6908 AGCGAAAGCGGAAGAGGCT 6926 >seq2682 Length=265177 Score = 129 bits (142), Expect = 1e-27 Identities = 174/238 (73%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || ||||| |||| ||| ||| | | |||||||||||||||| || ||||| | Sbjct 15453 AGGGCGCATGGGGGATACCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGAAA 15394 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||| |||| | | | ||||||| |||| ||||||||||| ||||| | Sbjct 15393 AGCTATGGGGAGC-AGCACATATGCATTGATCCATAGATATCCGAATGGGGCAACCCAGT 15335 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | ||| | || |||| ||| || | || ||||||| |||||||||| Sbjct 15334 CA----GGTGAA-GC---CTGATTACCC---TACGGGGGGCAAACGCGGGGAACTGAAAC 15286 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||||||||| | |||||| |||||| || | |||||| ||||||||||||||||| Sbjct 15285 ATCTAAGTACCCGCAGGAGAAGAAAATAATAGTGATTCCGTAAGTAGTGGCGAGCGAA 15228 >seq962 Length=5977 Score = 123 bits (136), Expect = 5e-26 Identities = 136/179 (76%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 141 GAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAA 200 ||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||| Sbjct 3202 GAATACATAGGGGTAAGAAGCGAACGCAGGGAACTGAAACATCTAAGTACCTGCAGGAAA 3143 Query 201 AGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGAT 260 || ||||||||||| ||| ||||||||||||||||| ||| || | | || Sbjct 3142 GGACATCAACCGAGACTCCGTAAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGGCAAT 3083 Query 261 AGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 | ||||| | || |||| | |||||| ||||||| ||||||||||||| || Sbjct 3082 -GATGAAT--AAAGCGGAACGATTTGGAAAAGTCGGCCATAGAGGGTGATAGCCCCTTA 3027 Score = 82.4 bits (90), Expect = 1e-13 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| |||||||| ||||||||| || ||||| | Sbjct 3398 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAA 3339 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| | |||||| || || | ||||||||| ||| ||||||||||| ||||| Sbjct 3338 AGCCGTGGGGAG-CTGCGAATAAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 3283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918336878368