Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq1316 280 3e-73
seq2000 163 5e-38
seq2403 159 6e-37
seq2682 129 1e-27
seq962 123 5e-26
>seq1316
Length=3583
Score = 280 bits (310), Expect = 3e-73
Identities = 258/323 (80%), Gaps = 4/323 (1%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 580 AGTGCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 639
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCG-- 118
|||| ||||||| ||||||| |||||||||| |||| |||||||||||||||||
Sbjct 640 AGCTACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCCACT 699
Query 119 GCC-CTTTGGGTCATTGCATGCTGAATACATAGG-TATGCAAAGCGAACGCGGCGAACTG 176
|| | || || | |||||||||||||| || |||||||| || ||||||
Sbjct 700 GCAGCAATGCAGTATCCCTAGCTGAATACATAGGCTAGTGGAAGCGAACCGGGTGAACTG 759
Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236
|||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 760 AAACATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCG 819
Query 237 AAATGGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAG 296
|||| ||| |||||| ||| ||| |||||| ||| |||||| |
Sbjct 820 AAATCGGAAGAGCCTGCACGTTTTAGCATTCTTGATATCAGAACGGAATGGAAAGTCCGG 879
Query 297 CCATAGCGGGTGATAGCCCCGTA 319
|||||||||||||||||||||||
Sbjct 880 CCATAGCGGGTGATAGCCCCGTA 902
>seq2000
Length=1661
Score = 163 bits (180), Expect = 5e-38
Identities = 188/252 (75%), Gaps = 11/252 (4%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | ||||||||||||||| | | |||||||||| ||||| ||||| |||||||
Sbjct 249 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATA 190
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||| ||| ||| |||||| || || ||| ||| || |||||||||||||| |
Sbjct 189 AGCGTCGGTGAGGTGGCAAACGACCTGCGACCCGGCGATCTCTGAATGGGGAAACCCACC 130
Query 121 CCTTTGGGTCA------TTGCATG--CTGAATACATAGGTATGCAAAGCGAACGCGGCGA 172
| || | | | | || |||||| |||||| | |||||| || ||
Sbjct 129 ---TGGGATAACCCAGGTATCTTGACCTGAATCCATAGGGTCAAGAGGCGAACCAGGGGA 73
Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232
||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 72 ACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCG 13
Query 233 AGCGAAATGGGA 244
|||||| ||||
Sbjct 12 AGCGAACGGGGA 1
>seq2403
Length=69003
Score = 159 bits (176), Expect = 6e-37
Identities = 193/259 (75%), Gaps = 14/259 (5%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGG---CGATGAAGGACGTAGTAGCTTGCG 57
|| || || ||||||||||||||| |||| ||||||||||||| | || ||
Sbjct 4432 AGGGCGCACGGTGGATGCCTTGGCAC---CAGGAACCGATGAAGGACGTGGGAGGCCACG 4488
Query 58 ATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| | ||||||| ||| || |||||||||| | |||||||||||||||||||
Sbjct 4489 ATAGTCCCCGGGGAGCTGTCAACCAAGCTTTGATCCGGGGGTTTCCGAATGGGGAAACCC 4548
Query 118 GGCCCTT----TGGG---TCATTGCATGCTGAATACATAGGTA-TGCAAAGCGAACGCGG 169
||| | |||| ||| ||||||| ||||||| | || || ||||||||
Sbjct 4549 GGCAGTCGTCATGGGCTGTCACCCGCTGCTGAACACATAGGCAGTGTGGAGGGAACGCGG 4608
Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229
||| |||||||||| |||| | ||||||| ||||| |||||| |||||| |||||||
Sbjct 4609 GGAAGTGAAACATCTCAGTACCCGCAGGAAGAGAAAACAACCGTGATTCCGGGAGTAGTG 4668
Query 230 GCGAGCGAAATGGGATGAG 248
|||||||||| |||||||
Sbjct 4669 GCGAGCGAAACCGGATGAG 4687
Score = 150 bits (166), Expect = 3e-34
Identities = 190/259 (73%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | |||||||| |||||| || ||||||||||||||| || ||||| |
Sbjct 6668 AGGGCATACGGTGGATGTCTTGGCACCAGGAGCCGATGAAGGACGTAGGAGACTGCGAAA 6727
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|| |||||| ||| | || ||||| ||||||||||||||||||||||
Sbjct 6728 AGTCTAGGGGAGCTGTCAACCGAGCTGAGATCCTAGAATTTCCGAATGGGGAAACCCGGA 6787
Query 121 CC------TTTGGGTCATTGCATGC-TGAATACATAGG-TATGCAAAGCGAACGCGGCGA 172
|| | ||||| ||| | |||| ||||||| |||| || |||||||| ||
Sbjct 6788 CCCAGTCATGTGGGTTCACCCATACCTGAACACATAGGGTATGTGGAGGGAACGCGGGGA 6847
Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232
| |||||||||| |||| | ||||||| ||||| |||||| |||||| ||||||||||
Sbjct 6848 AGTGAAACATCTCAGTACCCGCAGGAAGAGAAAACAACCGTGATTCCGTGAGTAGTGGCG 6907
Query 233 AGCGAAATGGGATGAGCCT 251
||||||| ||| ||| ||
Sbjct 6908 AGCGAAAGCGGAAGAGGCT 6926
>seq2682
Length=265177
Score = 129 bits (142), Expect = 1e-27
Identities = 174/238 (73%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| || ||||| |||| ||| ||| | | |||||||||||||||| || ||||| |
Sbjct 15453 AGGGCGCATGGGGGATACCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGAAA 15394
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| |||||| |||| | | | ||||||| |||| ||||||||||| ||||| |
Sbjct 15393 AGCTATGGGGAGC-AGCACATATGCATTGATCCATAGATATCCGAATGGGGCAACCCAGT 15335
Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180
| ||| | || |||| ||| || | || ||||||| ||||||||||
Sbjct 15334 CA----GGTGAA-GC---CTGATTACCC---TACGGGGGGCAAACGCGGGGAACTGAAAC 15286
Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
||||||||| | |||||| |||||| || | |||||| |||||||||||||||||
Sbjct 15285 ATCTAAGTACCCGCAGGAGAAGAAAATAATAGTGATTCCGTAAGTAGTGGCGAGCGAA 15228
>seq962
Length=5977
Score = 123 bits (136), Expect = 5e-26
Identities = 136/179 (76%), Gaps = 3/179 (2%)
Strand=Plus/Minus
Query 141 GAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAA 200
||||||||||| | |||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 3202 GAATACATAGGGGTAAGAAGCGAACGCAGGGAACTGAAACATCTAAGTACCTGCAGGAAA 3143
Query 201 AGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGAT 260
|| ||||||||||| ||| ||||||||||||||||| ||| || | | ||
Sbjct 3142 GGACATCAACCGAGACTCCGTAAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGGCAAT 3083
Query 261 AGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319
| ||||| | || |||| | |||||| ||||||| ||||||||||||| ||
Sbjct 3082 -GATGAAT--AAAGCGGAACGATTTGGAAAAGTCGGCCATAGAGGGTGATAGCCCCTTA 3027
Score = 82.4 bits (90), Expect = 1e-13
Identities = 89/117 (76%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| |||||||||||||||| |||||||| ||||||||| || ||||| |
Sbjct 3398 AGGGCATTTGGTGGATGCCTTGGCATGCACAGGCGAAGAAGGACGTGATACGCTGCGAAA 3339
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
||| | |||||| || || | ||||||||| ||| ||||||||||| |||||
Sbjct 3338 AGCCGTGGGGAG-CTGCGAATAAGCTTTGATCCATGGATCTCCGAATGGGGCAACCC 3283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918336878368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |