Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq809 156 7e-36 seq2264 140 5e-31 >seq809 Length=160633 Score = 156 bits (172), Expect = 7e-36 Identities = 208/282 (74%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| || | || || || | Sbjct 153134 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCATGTGCTTGGTCGATAGACCAAT 153191 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 153192 GGTGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCCA 153251 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | |||||||||||||| | Sbjct 153252 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCTTCGGCTTAGCGT 153309 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | |||| || |||||||| | | | | | ||| || Sbjct 153310 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 153363 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| |||||||||||||||||| Sbjct 153364 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 153405 >seq2264 Length=278406 Score = 140 bits (154), Expect = 5e-31 Identities = 126/153 (82%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| |||||| ||||| || | |||| | Sbjct 269732 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATTTGCGACTGTCCGATCGGGCAAT 269675 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 269674 GTCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 269615 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGT 152 ||| |||||| | ||| |||||| |||| Sbjct 269614 GAA-ACGGTGATGTTGGTCCCGCACATGTTAGT 269583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819145455872