Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq809 708 0.0
seq5555 176 1e-41
seq2264 168 2e-39
>seq809
Length=160633
Score = 708 bits (784), Expect = 0.0
Identities = 460/504 (91%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156283 GTACCCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 156224
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|| | ||| | || |||||||||||||||||||||||| ||||| || || || ||| ||
Sbjct 156223 CCTCATGTTGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 156164
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||| || |||||||| ||||||||| || | ||||||||||||| |||||| |
Sbjct 156163 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTTGCAACCATGTTT 156104
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 156103 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCA 156044
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||
Sbjct 156043 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 155984
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
|||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 155983 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 155924
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 155923 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 155864
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 155863 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 155805
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 155804 AGACAAGCATATGACTACTGGCAG 155781
Score = 426 bits (472), Expect = 5e-117
Identities = 405/511 (79%), Gaps = 11/511 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | |||||| |||| ||||||||||||||||||
Sbjct 146668 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 146610
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| ||| |||||||||||||||||||||||| ||||| || || || ||| ||
Sbjct 146609 CCCCGTGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 146550
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||| || |||||||| ||||||||| || | ||||||||||| |||||||||
Sbjct 146549 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTCATCACCATGGTA 146490
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
| | || ||||||||||||||||||| |||||| | ||||| || | |||||||
Sbjct 146489 GTCAGGTACACTACCATCGAAAGTTGATAAGGCAGACACTTGAAAGACACGTCGCCGGTA 146430
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GGC 294
|||| || |||||| ||| |||||| |||||||| | | ||| | | || ||
Sbjct 146429 CAAGACCGTGCGATCCGTCGAGTTATCATGAATCATC--GCAGCAACGGGCAGAGCCCGC 146372
Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353
|| | ||||||||||||||| || ||||||| ||||||||||||| ||||||||||
Sbjct 146371 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCATGTATTA 146312
Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413
|||||||||||||||| |||||||| ||| ||| | |||| |||| ||| ||| |
Sbjct 146311 GCTCTAGAATTACCACAGTTATCCAAGTAAGAAGTCAAGGTCAAGTAAATTATAGCTGGT 146252
Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473
||||||||| | ||||||||| |||| | | | ||| ||||| ||||||||||||||
Sbjct 146251 GTAATGAGCCGTACGCAGTTTCCCTGTCT-GGCAGGTTACACTTATACATGCATGGCTTA 146193
Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||| | | || || | | | |||||
Sbjct 146192 ATCTTTGAAATGAACACATCAGTTCAGGCAG 146162
>seq5555
Length=1185
Score = 176 bits (194), Expect = 1e-41
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 699 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTGTCACTACCT 758
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 759 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTGCTTGGATGTGG 810
>seq2264
Length=278406
Score = 168 bits (186), Expect = 2e-39
Identities = 192/251 (76%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 262 GTTATTATGAATCACCAAGGAGCC---CCGAAGGGCGT-TGGTTTTTTATCTAATAAATA 317
|||||| || ||||||| | | |||||| ||| | | |||| ||||||||||
Sbjct 252379 GTTATTCAGAGTCACCAACGTTTCAGGCCGAAGCCCGTATTGGTTTTGGTCTAATAAATG 252438
Query 318 CACCCCTTCCGAA--GTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
| | | | ||| | ||||| | ||| | || ||||||||||||||||||||||| ||||
Sbjct 252439 CGCTCGTCCCGTAAGGTCGGAGCTTTATTGCGTGTATTAGCTCTAGAATTACCACAGTTA 252498
Query 375 TCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433
|||| |||| | || | ||||| ||||| | ||| | ||||||||||||||| | |
Sbjct 252499 TCCAAGTAGGATAGTCAAGATCAAGTAAACAGTGGCTGTTGTAATGAGCCATTCGCGGCT 252558
Query 434 TCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493
|||| | || |||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 252559 TCACCAT-TAATCGGCTTGTGCATAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 252617
Query 494 ACTACTGGCAG 504
|| |||||||
Sbjct 252618 ACCGCTGGCAG 252628
Score = 168 bits (186), Expect = 2e-39
Identities = 192/251 (76%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 262 GTTATTATGAATCACCAAGGAGCC---CCGAAGGGCGT-TGGTTTTTTATCTAATAAATA 317
|||||| || ||||||| | | |||||| ||| | | |||| ||||||||||
Sbjct 265124 GTTATTCAGAGTCACCAACGTTTCAGGCCGAAGCCCGTATTGGTTTTGGTCTAATAAATG 265183
Query 318 CACCCCTTCCGAA--GTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
| | | | ||| | ||||| | ||| | || ||||||||||||||||||||||| ||||
Sbjct 265184 CGCTCGTCCCGTAAGGTCGGAGCTTTATTGCGTGTATTAGCTCTAGAATTACCACAGTTA 265243
Query 375 TCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433
|||| |||| | || | ||||| ||||| | ||| | ||||||||||||||| | |
Sbjct 265244 TCCAAGTAGGATAGTCAAGATCAAGTAAACAGTGGCTGTTGTAATGAGCCATTCGCGGCT 265303
Query 434 TCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493
|||| | || |||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 265304 TCACCAT-TAATCGGCTTGTGCATAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 265362
Query 494 ACTACTGGCAG 504
|| |||||||
Sbjct 265363 ACCGCTGGCAG 265373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510296190208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |