Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq809 708 0.0 seq5555 176 1e-41 seq2264 168 2e-39 >seq809 Length=160633 Score = 708 bits (784), Expect = 0.0 Identities = 460/504 (91%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 156283 GTACCCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 156224 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | ||| | || |||||||||||||||||||||||| ||||| || || || ||| || Sbjct 156223 CCTCATGTTGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 156164 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| || |||||||| ||||||||| || | ||||||||||||| |||||| | Sbjct 156163 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTTGCAACCATGTTT 156104 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 156103 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCA 156044 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||| Sbjct 156043 CAAGGCCATGCGATTCGAGGAGTTATCATGAATCACCAGTGAGCCCCGAAGGGCATTGGT 155984 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 155983 TTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTAG 155924 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 155923 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTTATATAATGA 155864 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 155863 GCCATTCGCAGTTTCGCGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 155805 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 155804 AGACAAGCATATGACTACTGGCAG 155781 Score = 426 bits (472), Expect = 5e-117 Identities = 405/511 (79%), Gaps = 11/511 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 146668 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 146610 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||| |||||||||||||||||||||||| ||||| || || || ||| || Sbjct 146609 CCCCGTGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 146550 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| || |||||||| ||||||||| || | ||||||||||| ||||||||| Sbjct 146549 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATCCTCCGTTACCCGTCATCACCATGGTA 146490 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||||||||||| |||||| | ||||| || | ||||||| Sbjct 146489 GTCAGGTACACTACCATCGAAAGTTGATAAGGCAGACACTTGAAAGACACGTCGCCGGTA 146430 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GGC 294 |||| || |||||| ||| |||||| |||||||| | | ||| | | || || Sbjct 146429 CAAGACCGTGCGATCCGTCGAGTTATCATGAATCATC--GCAGCAACGGGCAGAGCCCGC 146372 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 || | ||||||||||||||| || ||||||| ||||||||||||| |||||||||| Sbjct 146371 GTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCATGTATTA 146312 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 |||||||||||||||| |||||||| ||| ||| | |||| |||| ||| ||| | Sbjct 146311 GCTCTAGAATTACCACAGTTATCCAAGTAAGAAGTCAAGGTCAAGTAAATTATAGCTGGT 146252 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||| | ||||||||| |||| | | | ||| ||||| |||||||||||||| Sbjct 146251 GTAATGAGCCGTACGCAGTTTCCCTGTCT-GGCAGGTTACACTTATACATGCATGGCTTA 146193 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| | | || || | | | ||||| Sbjct 146192 ATCTTTGAAATGAACACATCAGTTCAGGCAG 146162 >seq5555 Length=1185 Score = 176 bits (194), Expect = 1e-41 Identities = 106/112 (95%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| Sbjct 699 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTGTCACTACCT 758 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG 112 |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 759 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTGCTTGGATGTGG 810 >seq2264 Length=278406 Score = 168 bits (186), Expect = 2e-39 Identities = 192/251 (76%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 262 GTTATTATGAATCACCAAGGAGCC---CCGAAGGGCGT-TGGTTTTTTATCTAATAAATA 317 |||||| || ||||||| | | |||||| ||| | | |||| |||||||||| Sbjct 252379 GTTATTCAGAGTCACCAACGTTTCAGGCCGAAGCCCGTATTGGTTTTGGTCTAATAAATG 252438 Query 318 CACCCCTTCCGAA--GTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 | | | | ||| | ||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct 252439 CGCTCGTCCCGTAAGGTCGGAGCTTTATTGCGTGTATTAGCTCTAGAATTACCACAGTTA 252498 Query 375 TCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| |||| | || | ||||| ||||| | ||| | ||||||||||||||| | | Sbjct 252499 TCCAAGTAGGATAGTCAAGATCAAGTAAACAGTGGCTGTTGTAATGAGCCATTCGCGGCT 252558 Query 434 TCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||| | || |||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 252559 TCACCAT-TAATCGGCTTGTGCATAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 252617 Query 494 ACTACTGGCAG 504 || ||||||| Sbjct 252618 ACCGCTGGCAG 252628 Score = 168 bits (186), Expect = 2e-39 Identities = 192/251 (76%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 262 GTTATTATGAATCACCAAGGAGCC---CCGAAGGGCGT-TGGTTTTTTATCTAATAAATA 317 |||||| || ||||||| | | |||||| ||| | | |||| |||||||||| Sbjct 265124 GTTATTCAGAGTCACCAACGTTTCAGGCCGAAGCCCGTATTGGTTTTGGTCTAATAAATG 265183 Query 318 CACCCCTTCCGAA--GTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 | | | | ||| | ||||| | ||| | || ||||||||||||||||||||||| |||| Sbjct 265184 CGCTCGTCCCGTAAGGTCGGAGCTTTATTGCGTGTATTAGCTCTAGAATTACCACAGTTA 265243 Query 375 TCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| |||| | || | ||||| ||||| | ||| | ||||||||||||||| | | Sbjct 265244 TCCAAGTAGGATAGTCAAGATCAAGTAAACAGTGGCTGTTGTAATGAGCCATTCGCGGCT 265303 Query 434 TCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||| | || |||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 265304 TCACCAT-TAATCGGCTTGTGCATAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 265362 Query 494 ACTACTGGCAG 504 || ||||||| Sbjct 265363 ACCGCTGGCAG 265373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510296190208