Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10798 86.0 1e-14 seq3203 86.0 1e-14 >seq10798 Length=6418 Score = 86.0 bits (94), Expect = 1e-14 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 60 GGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAA 119 ||| |||||||| ||||| ||| ||||||||||||| |||| || ||| || ||| Sbjct 4962 GGGTAGCCAGGAAGTTTACGTTGGAAAAATTAGAGTGCTCAATGCGGGCTAATGTCTGAA 5021 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 || |||||||||||| ||||||| ||||||||||||| ||||||| Sbjct 5022 TATTCGTGCATGGAATAATGAAATAGGA-TCGCGGTTCTATTTTATTGGTTT 5072 >seq3203 Length=11559 Score = 86.0 bits (94), Expect = 1e-14 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 |||| ||||||||||||| | | |||| || |||| ||| |||||| | | ||||| Sbjct 264 TTTATCTTGAAAAAATTAGGGCGCTCAATGCGGGCCAATGCCTGAATACTTGTGTATGGA 323 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| ||||||| | |||||||||| | ||||||| || || ||||| |||| Sbjct 324 ATAATAAAATAGGATCT-CGGTTCTATTCTTTTGGTTTTCGAAACTGCGATAATGGTTAA 382 Query 194 TAGGGATAGTCG 205 || ||||| || Sbjct 383 GAGCGATAGACG 394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914024874048