Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq108307 158 5e-36 seq49746 111 7e-22 seq315 105 3e-20 seq122085 89.7 2e-15 seq2532 86.0 3e-14 >seq108307 Length=644 Score = 158 bits (174), Expect = 5e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || | || |||||||||||||||||||||||||||| ||| |||||||||| Sbjct 469 AGAGCGTATACGCTGAGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGA 410 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || |||| ||||| ||||||||||||||||| | |||||| Sbjct 409 GGAAACTCTGGTGGAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGT 350 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 349 ATAGGGGCGA 340 >seq49746 Length=1808 Score = 111 bits (122), Expect = 7e-22 Identities = 93/113 (82%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 570 GACCCGAAAGATGG-TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||| | | ||||| |||||||| ||| ||||||||| | ||||||||||||| Sbjct 617 GACCCGAAAGGTTGATGAACAATGCCTGAGCAGGATGAAGCCAGTGTAAACTCTGGTGGA 558 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||| |||| |||| ||| ||||||||||||| | |||| ||||||||| Sbjct 557 AGTTCGAAGCGATTCTAACGTCCAAATCGATCGTCTGACTTGGATATAGGGGC 505 >seq315 Length=24121 Score = 105 bits (116), Expect = 3e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 || || |||||||||||||| ||| ||||||| |||||| ||||||||||| || || Sbjct 4603 AGGTGATGAACTATGCCTGAGCAGGACGAAGCCACAGGAAATTCTGGTGGAGGTCCGAAG 4662 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || ||| | |||||||||||||||| | ||||||||||||| Sbjct 4663 CGATTCCGATGTGCAAATCGATCGTCCCAGTTGGGTATAGGGG 4705 >seq122085 Length=544 Score = 89.7 bits (98), Expect = 2e-15 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| || || ||||| | || |||| |||||| || ||||| ||||||| Sbjct 120 GAGTCGGGTTGCCTGAGATCGCAGCCCAAAGTGGGTGGTAAACCTCATCTAAGGCTAAAT 61 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | ||||| |||||||||||| ||||||| |||| ||||| || |||| |||||| Sbjct 60 AC-GGCCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTG 4 >seq2532 Length=12642 Score = 86.0 bits (94), Expect = 3e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || | || |||||||||||||||||| ||||||||| || |||||||| | Sbjct 9896 AGAGCGTATACGCTGAGACCCGAAAGATGGTGAAATATGCCTGAGCAGAATGAAGCCAAA 9955 Query 614 GGAAACTCTGGTGGAGG 630 ||||||||||||||||| Sbjct 9956 GGAAACTCTGGTGGAGG 9972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077245798550