Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5764 127 3e-27 seq21021 107 3e-21 seq38955 104 4e-20 seq3537 100 5e-19 seq759 93.3 7e-17 seq64638 89.7 8e-16 seq41998 89.7 8e-16 seq15381 86.0 1e-14 seq5973 86.0 1e-14 seq6258 82.4 1e-13 seq84412 75.2 2e-11 seq84331 75.2 2e-11 >seq5764 Length=8965 Score = 127 bits (140), Expect = 3e-27 Identities = 101/119 (85%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 || |||| ||| || || | ||| ||||||||||||| ||||||||||||||||||||| Sbjct 4635 CTGTTTATTAGGCTAGAGATTTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACC 4694 Query 201 AACTAAGAACGGCCATGCACCA-CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||| ||||||||| | |||| |||||||||||||||| || ||||||| Sbjct 4695 ACCTAAGAACGGTCATGCACCATCAACCCGCCGAATCAAGAAAGAGCTCTCGATCTGTC 4753 >seq21021 Length=4098 Score = 107 bits (118), Expect = 3e-21 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||||| |||||| ||||||||||||| |||| || |||||||| ||||| Sbjct 3973 CTATTTAGTAGGTTAGAGTCTCGCTCGTTATCGGAATAAACCGGAAAAATCACTTCACCA 3914 Query 202 ACTAAGAACGGCCATGCACCAC 223 |||||||||||||| ||||||| Sbjct 3913 ACTAAGAACGGCCAAGCACCAC 3892 >seq38955 Length=2356 Score = 104 bits (114), Expect = 4e-20 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| |||||| || ||| ||||||||||||| |||| || |||||||| ||||| Sbjct 125 CTATTTAGTAGGTTAGAGTATCGCTCGTTATCGGAATAAACCGGAAAAATCACTTCACCA 184 Query 202 ACTAAGAACGGCCATGCACCAC 223 |||||||||||||| ||||||| Sbjct 185 ACTAAGAACGGCCAAGCACCAC 206 >seq3537 Length=11082 Score = 100 bits (110), Expect = 5e-19 Identities = 95/119 (80%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 || |||| ||| || || | ||| |||| |||||||| | |||||||||||||||||| Sbjct 4521 CTGTTTATTAGGCTAGAGATTTCGCTCGTCATCGGAATAAGTCAGACAAATCACTCCACC 4580 Query 201 AACTAAGAACGGCCATGCACCA-CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||| |||| ||| | | || |||||||||||||||| || ||||||| Sbjct 4581 AACTGAGAACGGTCATGTGCCATCAATCCGCCGAATCAAGAAAGAGCTCTCGATCTGTC 4639 >seq759 Length=19006 Score = 93.3 bits (102), Expect = 7e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || |||||| ||||||||||||| || ||||||||||||||||||| Sbjct 15186 CTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAATCAGACAAATCACTCCACCA 15127 Query 202 ACTAAGAACGG 212 | ||||||||| Sbjct 15126 ATTAAGAACGG 15116 >seq64638 Length=1307 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||| || ||| | |||| | |||||| ||||| | |||||||||||||| ||| Sbjct 1013 TATTCAGTAGGCCAGAGTCTTGCTCGTTACTGGAATAAGCCAGACAAATCACTGTGCCAG 1072 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||| ||||| || |||||||||||||||| |||||||||| Sbjct 1073 TTACGAACGGCCATGC-GCACCA-ACACTGAATCAAGAAAGAGCTGTCAATCTGTC 1126 >seq41998 Length=2177 Score = 89.7 bits (98), Expect = 8e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||||||||||||||||||||||| ||||||||||| | | |||||||||||||||| Sbjct 1927 AATCACTCCACCAACTAAGAACGGTCATGCACCACCTACGACCGAATCAAGAAAGAGCTC 1868 Query 249 TCAATCTGT 257 ||| ||||| Sbjct 1867 TCATTCTGT 1859 >seq15381 Length=5133 Score = 86.0 bits (94), Expect = 1e-14 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| Sbjct 1059 CAGTGTAGCGCGCGTGCAGCCCTAGACATCTAAGGGCATCACAGACCTGTTATTG-CTC- 1116 Query 77 AACTTC 82 |||||| Sbjct 1117 AACTTC 1122 >seq5973 Length=8797 Score = 86.0 bits (94), Expect = 1e-14 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||| || ||| Sbjct 2568 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTACTG-CTC- 2511 Query 77 AACTTC 82 |||||| Sbjct 2510 AACTTC 2505 >seq6258 Length=8591 Score = 82.4 bits (90), Expect = 1e-13 Identities = 85/103 (83%), Gaps = 10/103 (10%) Strand=Plus/Minus Query 17 CAGTGTAG--CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||| || Sbjct 8088 CAGTGTAGAGCGCGCGTGCAGCCCTGGACATCTACGGGCATCACAGACCTGTTATTG-CT 8030 Query 75 CAAACTTCCATTGGCTG-GAAG--CCAATAGTCCCTCTAAGAA 114 | ||||| ||| |||| ||| || | ||||||||||||| Sbjct 8029 C-AACTT-CAT--GCTGCTAAGCACCGCTTGTCCCTCTAAGAA 7991 >seq84412 Length=915 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||| || |||| || |||||| |||||| | ||| ||||||||||| |||| || || Sbjct 357 CTATCTAACAGGCTAGAGTCTCGCTCGTTACCAGAAGAAACCAGACAAAGCACTTCAACA 298 Query 202 ACTAAGAACGGCCATGCAC 220 ||||||||| |||||||| Sbjct 297 ACTAAGAACCACCATGCAC 279 >seq84331 Length=916 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||| || |||| || |||||| |||||| | ||| ||||||||||| |||| || || Sbjct 357 CTATCTAACAGGCTAGAGTCTCGCTCGTTACCAGAAGAAACCAGACAAAGCACTTCAACA 298 Query 202 ACTAAGAACGGCCATGCAC 220 ||||||||| |||||||| Sbjct 297 ACTAAGAACCACCATGCAC 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795808872681