Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2134 264 2e-68 seq18782 241 2e-61 seq20393 228 1e-57 seq14215 206 5e-51 seq102980 131 3e-28 seq37166 123 4e-26 seq37174 118 2e-24 seq65109 114 2e-23 seq6827 104 4e-20 seq36497 96.9 6e-18 seq28696 95.1 2e-17 seq21548 87.8 3e-15 seq1895 73.4 7e-11 >seq2134 Length=13498 Score = 264 bits (292), Expect = 2e-68 Identities = 170/186 (91%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||| | Sbjct 8556 AGTAAGGTAAAACTAATCTGTCTCGCGACGGTCTAAGCCCAGCTCACGTTCCCTATTGGA 8497 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| Sbjct 8496 AGGTGAACAATCCAAAGCTTGGCGAATTCTGCTTCGTAGTGATAGGAAGAGCCGACATCG 8437 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 8436 AAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCTAGTTATCCCTGTG 8377 Query 216 GTAACT 221 |||||| Sbjct 8376 GTAACT 8371 >seq18782 Length=4459 Score = 241 bits (266), Expect = 2e-61 Identities = 211/259 (81%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||||||||||||||||||||| | |||| |||||| ||| ||||||||| |||| || Sbjct 820 AGTAGGGTAAAACTAACCTGTCT-ACGACGACCTAAACTCAGTTCACGTTCCTTATTGGT 762 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||| |||||||||| ||||||||||||| | ||||| |||||| | ||| Sbjct 761 GGGTGAACAGTCCAACGCTTGGTGAATTCTGCTTCGCAACGATAGAAAGAGCTGGTATCA 702 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||||||| |||||||| || |||||||||| | ||| | |||| ||||| Sbjct 701 AAGGATCAAAAAGCAACTTCGCTATGGACACTTGGCTGCCCCGAGCTAATTATTCCTGTA 642 Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCAC 274 |||| ||||||| ||||||| || ||| |||| | | |||| ||||||| |||| Sbjct 641 GTAATTTTTCTGACACCTCTTGCTAGAAACTTTCTA-ATTCAAAAGAATCGATACGCCAT 583 Query 275 ACTTTCATGGTTTGTATTC 293 ||||| |||| ||||||| Sbjct 582 GCTTTCGTGGTCTGTATTC 564 >seq20393 Length=4198 Score = 228 bits (252), Expect = 1e-57 Identities = 208/257 (81%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 ||||||||||||||||||||| | | || |||||||||| ||||||| | |||| |||| Sbjct 2304 TAGGGTAAAACTAACCTGTCT-ACGTCGACCTAAACCCAGTTCACGTTACTTATTGGTGG 2246 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 ||||||| |||||||||| ||||||||||||| | ||||| |||||| | ||| || Sbjct 2245 GTGAACAGTCCAACGCTTGGTGAATTCTGCTTCGC-ACGATAGAAAGAGCTGGTATCAAA 2187 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 ||||||||||||||| || ||||| || |||||||||| | ||| | |||| |||||||| Sbjct 2186 GGATCAAAAAGCAACTTCACTATGGACACTTGGCTGCCCCGAGCTAATTATTCCTGTGGT 2127 Query 218 AACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 || ||||||| || |||| || ||| |||| | | |||||||||||| |||| | Sbjct 2126 AATTTTTCTGACATCTCTTGCTAAAAACTTTCTA-ATTCAAAAGGATCGATACGCCATGC 2068 Query 277 TTTCATGGTTTGTATTC 293 |||| |||| ||||||| Sbjct 2067 TTTCGTGGTCTGTATTC 2051 >seq14215 Length=5417 Score = 206 bits (228), Expect = 5e-51 Identities = 156/184 (85%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||||||||||| ||||||| | || | ||| |||||||||||||||||| | |||| Sbjct 687 TAGGGTAAAACTAATCTGTCTCGCGGCGATTTAAGCCCAGCTCACGTTCCCTACTGGTGG 628 Query 98 GTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAA 157 || |||| ||||| |||| |||||||||||| |||| ||||||||||| || || Sbjct 627 GTAAACAGTCCAATGCTTGGCGAATTCTGCTT------GATAAGAAGAGCCGACGTCAAA 574 Query 158 GGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 || ||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||| Sbjct 573 GGTTCAAAAAGCAACGTCGCTATGGACGCTTTGCTGCCGCAAGCCAGTTATCCCCGTGGT 514 Query 218 AACT 221 |||| Sbjct 513 AACT 510 >seq102980 Length=689 Score = 131 bits (144), Expect = 3e-28 Identities = 138/183 (75%), Gaps = 19/183 (10%) Strand=Plus/Minus Query 38 TAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGG 97 |||||| ||| |||||||||||| ||||| || | ||||||||| ||||||| |||| Sbjct 389 TAGGGTGAAATTAACCTGTCTCACAGCGGTCAAAGCTCAGCTCACGACCCCTATTGGTGG 330 Query 98 GTGAACAATCCAACGCTTACCG---AATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 | ||||| || || | ||||| |||| |||| ||||| |||| ||| Sbjct 329 G---------CAACGATTGGCGGCGAGTTCTGTTTCGCAATGACAGGAATAGCCCTGATC 279 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| Sbjct 278 GAAGGATCAAAAAGCAACGTCGCTA-------ATGGCTGTCACAAGCCAGTTATGCCTGT 226 Query 215 GGT 217 ||| Sbjct 225 GGT 223 >seq37166 Length=2474 Score = 123 bits (136), Expect = 4e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| Sbjct 268 AGGAAGAGCCGACATCGAAGGATCAAAAAGTAACATCGCTATGGACGCTTGACTGCCACA 327 Query 199 AGCCAGTTATCCCTGTGG 216 |||||||||||||||||| Sbjct 328 AGCCAGTTATCCCTGTGG 345 >seq37174 Length=2473 Score = 118 bits (130), Expect = 2e-24 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||| | Sbjct 2196 AGGAAGAGCCGACATCGAAGGATCAAAAAGTAACATCGCTATGGACGCTTGACTGCCAAA 2137 Query 199 AGCCAGTTATCCCTGTGG 216 |||||||||||||||||| Sbjct 2136 AGCCAGTTATCCCTGTGG 2119 >seq65109 Length=1295 Score = 114 bits (126), Expect = 2e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 |||||| ||||||||||||||||||||||||||| | |||||| ||| |||||||||||| Sbjct 275 AGGAAGGGCCGACATCGAAGGATCAAAAAGCAACTTTGCTATGGACGTTTGGCTGCCACA 334 Query 199 AGCCAGTTATCCCTGTGGTAA 219 ||||| ||||||||||| ||| Sbjct 335 AGCCAATTATCCCTGTGCTAA 355 >seq6827 Length=8216 Score = 104 bits (114), Expect = 4e-20 Identities = 89/110 (81%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 ||||||||| |||||||||||| ||||||||| | ||||| |||||||| ||||| Sbjct 1917 CCTGTCTCACGACGGTCTAAACTCAGCTCACGCCCTCTATTGGTGGGTGA-----CCAAC 1863 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||| | |||||||||||||| ||| ||||| | || ||||||||| || Sbjct 1862 GCTCAGCGAATTCTGCTTCGCAATGGTAGGAGCATCCTACATCGAAGAAT 1813 >seq36497 Length=2522 Score = 96.9 bits (106), Expect = 6e-18 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 66 CCCTATTGGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGA 7 Query 146 GCCGAC 151 |||||| Sbjct 6 GCCGAC 1 >seq28696 Length=3161 Score = 95.1 bits (104), Expect = 2e-17 Identities = 87/110 (79%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 || |||||| |||||||||||| |||||||||| | || || |||||||| ||||| Sbjct 1940 CCCGTCTCACGACGGTCTAAACTCAGCTCACGTCCTCTGTTGGTGGGTGA-----CCAAC 1886 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||| | |||||||||||||| || |||||| | || || |||||| || Sbjct 1885 GCTCAGCGAATTCTGCTTCGCAATAATAGGAGCATCCTACGTCGAAGAAT 1836 >seq21548 Length=4022 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 ||||| |||||||||||| ||||||||||||||||||||||||| | |||||| ||||| Sbjct 920 TAAAATTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCTCCATTAGTCGGTGAG 861 Query 103 CAA 105 ||| Sbjct 860 CAA 858 >seq1895 Length=14174 Score = 73.4 bits (80), Expect = 7e-11 Identities = 63/78 (81%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||||||||||| || |||||||| || ||||||| || |||||| |||||| | || Sbjct 5616 AGTAGGGTAAAAGTAGTCTGTCTCAGGAGAGTCTAAAGTCAACTCACGATCCCTACTGGT 5675 Query 96 GGGTGAACAATCCAACGC 113 || ||| |||||||| || Sbjct 5676 GGATGAGCAATCCAATGC 5693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853302941856