Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20393 221 4e-55 seq18782 199 1e-48 seq119500 197 4e-48 seq6519 158 4e-36 seq69873 123 8e-26 seq84347 104 8e-20 seq50828 102 3e-19 seq14955 98.7 3e-18 seq2401 96.9 1e-17 seq87502 89.7 2e-15 seq79636 87.8 6e-15 >seq20393 Length=4198 Score = 221 bits (244), Expect = 4e-55 Identities = 302/415 (73%), Gaps = 19/415 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| ||| ||||||||||||||||||| Sbjct 2017 CTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAACTAGCCTTAGGACACCTGCGTTACT 1958 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT- 125 ||| |||||||| || |||| |||||||| | || |||| ||| || | | | Sbjct 1957 TTTTGACAGATGTATCGTTCCAGTCAAACTCCTCGCCCGACACTGTTTTCGGCGCAGTCG 1898 Query 126 --CGGCCCGCGAAGGAC----CTTAACGCCAGAAAATG----GTCGGTGAAGACCAGTTC 175 ||||| ||| | | ||||| | |||||| | | || ||| ||| Sbjct 1897 TACGGCCATCGAGTGGCTGTTCTTAAATC--GAAAATTTCGAGACTGTTTGTCCCAATTC 1840 Query 176 -CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 || || || | ||||||||||| ||| | | | |||||||||||| || ||||| Sbjct 1839 TCGTTTTATCAAATAAGTAAAAAATCGAAGAAAGCAATGGTATTTCACTGGCCGCGAAAT 1780 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTT--CACAAAGTCGGACTAGAGTCAAGC 292 | || ||| || | |||| ||||||| | ||| |||| ||| ||| || ||||||| Sbjct 1779 GCCTTCCAGTTGTGCTACGCCTCTCA--TTATTCTACACAGAGTTGGATTAAAGTCAAGT 1722 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||| ||||||||| || || | |||||| ||||| ||||||| |||||||| Sbjct 1721 TCAACAGGATCTTCTTTCTCCTCTATGTTTGCCAAGTCCGTTTTCTTGGCTTTGGTTTCG 1662 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| |||||| ||||||||||||| ||||||||||||||| ||| |||||||||| Sbjct 1661 CTACATAGTAAATAGGGACAGTGGTAATCTCGTTAATCCAGTCA-GCGCGTCACT 1608 >seq18782 Length=4459 Score = 199 bits (220), Expect = 1e-48 Identities = 298/417 (71%), Gaps = 31/417 (7%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 |||||||||| ||| |||| |||||| |||| | ||| ||||||||||| | | Sbjct 528 TTTGCTCTACGAGAGGTTTCCGTTCTCTCTGAGCTAGCTTTA---CACCTGCGTTACGTT 472 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGG 128 || |||||||| |||||| | ||| |||| | ||||||| ||| || | | | ||| Sbjct 471 TTGACAGATGTATCGCCCCGGTCAAGCTCCTCGCCTGACACTGTTTTCGGCGCAG-TCGT 413 Query 129 CCCGCGAAGGAC-----CTTAACGCCAGAAAATGGTCGGTGAAGAC----------CAGT 173 | || | ||| | ||| | |||||| ||| |||| || | Sbjct 412 ACGGCCACGGAATAGTACATAAATC--GAAAATC-TCG----AGACTGTTTCATCTCAAT 360 Query 174 TCC-GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA 232 || | || || | ||||||||||| ||| | | |||||||||||||| ||| |||| Sbjct 359 TCTTGTTTTATCAAATAAGTAAAAAATCGAAGAAAGCAGTGGTATTTCACTGGCGACGAA 300 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATT--TCACAAAGTCGGACTAGAGTCAA 290 | | || ||| || | |||| ||||||| | ||| ||||| ||| ||| || |||||| Sbjct 299 ATGCCTTCCAGTTGTGCTACGCCTCTCA--TTATTCTTCACAGAGTTGGAATAAAGTCAA 242 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 ||||||| |||||||| ||||| | |||||||||||| |||| ||||||||| Sbjct 241 ATTCAACAGCATCTTCTTTTTCCGCTATGTTTGCCAAGCCCGTTTTCTTGACTGTGGTTT 182 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||| | |||||| |||||||||||| |||| |||||||| |||||||||||||| Sbjct 181 CGCCACATAGTAAGTAGGGACAGTGGCGGTCTCTTTAATCCAGTCATGCGCGTCACT 125 >seq119500 Length=563 Score = 197 bits (218), Expect = 4e-48 Identities = 114/117 (97%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 563 CACGAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 504 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 503 TACCCGCGCTTGGTTGAATTTCTTCACTTTTACATTCAGAGCACTGGGCAGAAATCA 447 >seq6519 Length=8413 Score = 158 bits (174), Expect = 4e-36 Identities = 103/112 (92%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 423 CATTTGGCTACCTTAAGAGAGTCAT-AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1559 CATTTGGCTACCTTAAGAGAGTCATTAGTTACTCCCGCCGTTTACCCGCGGTTGGTTGAA 1618 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||| ||||||||||||||| | ||||||| Sbjct 1619 TTTCTTCACTTTTACATTCAGAGTACTGGGCAGAAATCAGAGACAGTCAACA 1670 >seq69873 Length=1182 Score = 123 bits (136), Expect = 8e-26 Identities = 138/179 (77%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || |||||||| || |||| | | ||||||||||||| || | ||| | |||||||| Sbjct 1062 GAATAAGTAAAGAATCGATGAAATTCGTGGTATTTCACT-GCTGCAAAATGCCTCCCACT 1004 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 || || |||| || | | |||||| | |||||||| | ||||||||| |||||| | Sbjct 1003 CAT-CTCTACCTGACATGGCTGTTCACAGAATCGGACTAAAATCAAGCTCAGCAGGGTTT 945 Query 305 TCTTTCC-CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 |||||| || ||| | |||||| ||||||||||||||||||||| | |||| |||| Sbjct 944 TCTTTCTTCCACTGTGTTTGCCAAGTCCGTTCCCTTGGCTGTGGTTTTGTTAGA-AGTA 887 >seq84347 Length=916 Score = 104 bits (114), Expect = 8e-20 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTA 251 |||| || |||| | |||||||||||||| ||| | ||| | || ||||||| ||| Sbjct 76 TAAAGAACCGATGAAAGTAGTGGTATTTCATCAGCGACAAAATGCCTTCCACTTAAGCTA 135 Query 252 CACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC 311 ||||| ||| | | ||| | ||||||||| | ||||| |||||||| ||||||||||| Sbjct 136 CACCTTTCAGGGCTCCTCATAGAGTCGGACTGGGGTCAACCTCAACAGAGTCTTCTTTCC 195 Query 312 CCGCT 316 ||||| Sbjct 196 CCGCT 200 >seq50828 Length=1763 Score = 102 bits (112), Expect = 3e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCATGCGCGTCACGAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 2 Query 454 T 454 | Sbjct 1 T 1 >seq14955 Length=5240 Score = 98.7 bits (108), Expect = 3e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 || |||||| || || ||||||||||| |||||||||||||||||| |||||| |||| Sbjct 945 TAATTACTCTCGTCGATTACCCGCGCTCAGTTGAATTTCTTCACTTTTACATTCGAAGCA 886 Query 507 CTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| || ||||||| Sbjct 885 CTGGGCAGAAATCAGATACAGTCAACA 859 >seq2401 Length=12896 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 ||||| |||||||||||| ||||||||| ||||||||| ||||| |||| |||||| Sbjct 2975 CAAGCTGGTTCCCTTGGCTCTGGTTTCGCCAGATAGTAGGTAGGGGTGGTGGAAATCTCA 2916 Query 385 TTAATCCATTCATGCGCGTCACT 407 |||||| | |||||||||||||| Sbjct 2915 TTAATCTAATCATGCGCGTCACT 2893 >seq87502 Length=870 Score = 89.7 bits (98), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG-ATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||| |||||||||||||||||| | | || ||| | ||||| || || || Sbjct 821 GAGTCAAACTCAACAGGGTCTTCTTTTCTCACTACATT--GTCAAGCTTATTGTTTTAGC 764 Query 343 TGTGGTTTCGCTAGATAGTA---GATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||| |||||| |||||||| ||||||| ||||||||||||| |||| |||||||| Sbjct 763 TGTAATTTCGCCAGATAGTAATAGATAGGGGAAGTGGGAATCTCGCTAATTCATTCATG 705 >seq79636 Length=992 Score = 87.8 bits (96), Expect = 6e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 394 TCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 940 TCATGCGCGTCACGAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633100386848