Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gongylonema_20pulchrum_20[genbank_20GCA_5F000951235.1_202014-09-25] 128,401 sequences; 322,334,493 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq109617 381 2e-103 seq10798 165 2e-38 seq1820 116 1e-23 seq114 104 7e-20 seq38448 95.1 4e-17 seq37434 95.1 4e-17 seq6117 91.5 4e-16 seq267 84.2 7e-14 seq2410 80.6 8e-13 seq8288 77.0 1e-11 >seq109617 Length=634 Score = 381 bits (422), Expect = 2e-103 Identities = 377/482 (78%), Gaps = 19/482 (4%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | || || ||||| | |||||||||||| | || | || ||||||||||| Sbjct 19 AAAGAGAACGGTCTCGTTATTTTTCGTCACTACCTCCTCATGCTGAGAGTGGGTAATTTG 78 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 79 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAGTCGA 138 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| |||||||||||| |||||||||||| || ||||||||||||||| Sbjct 139 ACCCTTATTCTCCGTTACCCGTTACAACCATGGTAGGCACATAAACTACCATCGAAAGTT 198 Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCG-TTAAGTT 264 |||| |||||| | |||| || | ||||||| |||| ||||||||| | || || | Sbjct 199 GATAAGGCAGACACTTGATAGATACGTCGCCGGTGCAAGACCATGCGATCAGCTTGAGCT 258 Query 265 ATTATGAATCACCAAGGA-------GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATA 317 ||| || ||||||| || ||||||| |||| |||| |||||||| || Sbjct 259 ATTCAGAGTCACCAATGAACGGGTTGCCCCGA------TTGG-TTTTAATCTAATAGATG 311 Query 318 CACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATC 376 | | | | | ||||||| | ||| |||||||||||||||||||||||||| |||||| Sbjct 312 CGCTCGTCCATAAGTCGGAGCTTTGGTGCATGTATTAGCTCTAGAATTACCACAGTTATC 371 Query 377 CATGTAGTA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 || || | | | | ||||| || | ||| ||| | ||||||||| ||||| ||||| Sbjct 372 CACGTTGGATAATCAAGATCAAGTACATTATAGCTGTTATAATGAGCCGTTCGCGGTTTC 431 Query 436 AC--TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 || | | || |||| |||||||||||||||||||| ||||||||||||||||| Sbjct 432 ACCATTTTAGGAACGCTTGAACTTAGACATGCATGGCTTAGCCTTTGAGACAAGCATATA 491 Query 494 AC 495 || Sbjct 492 AC 493 >seq10798 Length=6418 Score = 165 bits (182), Expect = 2e-38 Identities = 131/156 (84%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 4748 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 4690 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || | || ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4689 CCTCATGCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGAATGTGGTAGCCGTT 4630 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 |||||||||||||||||||| ||||||||| ||||| Sbjct 4629 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCC 4594 >seq1820 Length=14414 Score = 116 bits (128), Expect = 1e-23 Identities = 100/126 (79%), Gaps = 11/126 (9%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||| | | || | || ||||||||||||| |||||||||||||| Sbjct 4676 TATTTTTCGTCACTACCTTCTCATGCTGAGAGTGGGTAATTTGCGTGCCTGCTGCCTTCC 4735 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | ||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 4736 TCGGATGTGGT-----------AGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 4784 Query 163 CCCGTT 168 | |||| Sbjct 4785 CTCGTT 4790 >seq114 Length=31060 Score = 104 bits (114), Expect = 7e-20 Identities = 114/150 (76%), Gaps = 5/150 (3%) Strand=Plus/Plus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||||| || ||| |||| |||||||||| |||||||||||||| | Sbjct 20626 TGGGTAATTTGCGCTCCCGCTACCTTT----GATGTGGTAGTCGTTTCTCAGGCTCTTTT 20681 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG-CCACTATCCTA 193 ||||| ||||||| | ||| ||||| ||| || |||||| |||| | || || Sbjct 20682 CCCGGAGTCGAACCGTTATTTTCCGTTGCCCTGTGCAACCATGCTAGGTGGATTAAAATA 20741 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGA 223 | ||||||||||| || |||||| | |||| Sbjct 20742 CTATCGAAAGTTGGTAAGGCAGACAATTGA 20771 >seq38448 Length=2389 Score = 95.1 bits (104), Expect = 4e-17 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 |||||| ||||||||| |||| |||||| | ||| ||| |||| |||||||||||| Sbjct 1123 GGTAGCTGTTTCTCAGATCCCCTGTCCGGAGTTGAATCCTTATTCTCCGTTACCCGTTAC 1182 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 ||||||| | || || ||||||| |||||||| |||||||| | |||| || | Sbjct 1183 AACCATGGAAACACA-TAAACTACCATTAAAAGTTGAAAGGGCAGACACTTGATGGATAC 1241 Query 231 ATCGCCGGCTCAAG 244 |||||| | |||| Sbjct 1242 ATCGCCTGTACAAG 1255 >seq37434 Length=2458 Score = 95.1 bits (104), Expect = 4e-17 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 |||||| ||||||||| |||| |||||| | ||| ||| |||| |||||||||||| Sbjct 1048 GGTAGCTGTTTCTCAGATCCCCTGTCCGGAGTTGAATCCTTATTCTCCGTTACCCGTTAC 1107 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 ||||||| | || || ||||||| |||||||| |||||||| | |||| || | Sbjct 1108 AACCATGGAAACACA-TAAACTACCATTAAAAGTTGAAAGGGCAGACACTTGATGGATAC 1166 Query 231 ATCGCCGGCTCAAG 244 |||||| | |||| Sbjct 1167 ATCGCCTGTACAAG 1180 >seq6117 Length=8690 Score = 91.5 bits (100), Expect = 4e-16 Identities = 97/130 (75%), Gaps = 16/130 (12%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||| || || | | || | | ||||||||||||||||||| |||||||| Sbjct 4284 TATTTTTCGTCAGTATCTTCTCATGCTGAGGGTGGGTAATTTGCGCGCCTGTTGCCTTCC 4225 Query 103 TTGGATGTGG----TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||||||| ||||||||||||| ||| ||||||||| |||| || Sbjct 4224 TTGGATGTGGTAGCTAGCCGTTTCTCA------------GGAGTCGAACCCTTATTCTCC 4177 Query 159 GTTACCCGTT 168 |||| ||||| Sbjct 4176 GTTATCCGTT 4167 >seq267 Length=24991 Score = 84.2 bits (92), Expect = 7e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||| | || | || |||||||||||||||||||||||||||| Sbjct 23979 TATTTTTCGTCACTACCTCCTCATGCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 24038 Query 103 TTGGATGTG 111 |||||| || Sbjct 24039 TTGGATATG 24047 >seq2410 Length=12878 Score = 80.6 bits (88), Expect = 8e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | |||||||||||| | || | || | ||||| |||||||||||||||||||| Sbjct 7360 TATTTTTCGTCACTACCTCCTCATGCTGAGAGTAGGTAACTTGCGCGCCTGCTGCCTTCC 7419 Query 103 TTGGATGTG 111 ||||||||| Sbjct 7420 TTGGATGTG 7428 >seq8288 Length=7452 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 78 GTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCC 137 ||| ||||||| | |||||||||| |||| ||||| ||||||||||||||||| |||| Sbjct 2682 GTATTTTGCGCACTTGCTGCCTTCTTTGGTGGTGGTGCCCGTTTCTCAGGCTCCCGCTCC 2623 Query 138 GGAATCGAACCCTAATTCCCCGTTA 162 | | |||||| ||| |||||| Sbjct 2622 AGCTCCAAACCCTTATTTTCCGTTA 2598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508460631296