Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq473 208 1e-51 seq1286 192 1e-46 seq12140 174 3e-41 seq980 127 4e-27 seq2971 104 5e-20 >seq473 Length=1908 Score = 208 bits (230), Expect = 1e-51 Identities = 244/325 (75%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| ||||||||| |||||| ||| | |||||||||| ||| ||||| || | | | Sbjct 1394 AGGGGAGTGAAATAGTACCTGAAACCGTGTGCCTACAAGCCGTCAGAGCCC-GTTAATGG 1336 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA-GCGAGGTTAAG 129 |||| ||||||||||||| | ||||| || ||||||| || | | ||||||||||| Sbjct 1335 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGATATGATGCGAGGTTAAG 1278 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || |||||||| |||||| || || || ||||| | |||||| | Sbjct 1277 TTACTATGTAACGG-AGCCGAAGCGAAAGCAAGTCTGAATGGGGCGTCAAGTTGGATGTA 1219 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| ||||| ||||||| ||||||||||||| | ||||| | || Sbjct 1218 TTAGACCCGAAACCATGTGACCTACCCATGAGCAGGTTGAAGGTGAGGTAAAACTCACTG 1159 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||||||||||| | |||||||||||| | |||||||| | |||||| || |||| Sbjct 1158 GAGGACCGAACCAGGGCACGTTGAAAAGTGCTTGGATGACTTGTGGGTAGCGGAGAAATT 1099 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||| | |||| ||| |||||| || Sbjct 1098 CCAAACGAACTTGGAGATAGCTGGT 1074 >seq1286 Length=1409 Score = 192 bits (212), Expect = 1e-46 Identities = 239/325 (74%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | || Sbjct 1289 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 1230 Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 1229 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 1171 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || |||||||| |||| |||| |||||| ||||| ||||| || Sbjct 1170 CGAATAGGGG-----AGCCGAAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 1116 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | || Sbjct 1115 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 1056 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| || |||||||| || ||||||||| | || | ||||||||||| Sbjct 1055 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 996 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| |||| |||||| || Sbjct 995 CCAATCAAACCGGGAGATAGCTGGT 971 >seq12140 Length=4113 Score = 174 bits (192), Expect = 3e-41 Identities = 244/336 (73%), Gaps = 12/336 (4%) Strand=Plus/Plus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| | |||||||||| ||||||||| Sbjct 1718 TACCCCGGG-AGGGGAGTGAAATAGTTCCTGAAACCGTGTGCCTACAAGCCGTCGGAGCC 1776 Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCA-CCAG 119 || ||||||||||||||||||| | ||||||||| ||||||||| |||| | Sbjct 1777 TTTTGG---GGTGACGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGT-GTCATGTCG 1832 Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGA 179 ||||||||| | | || | ||| || || ||||||||| || || |||||| || Sbjct 1833 CGAGGTTAA-CCCGTGTGG---GGTAGTCGTAGCGAAAGCGAGTCTGAAGAGGGCGTTGA 1888 Query 180 GTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 || | | |||||| |||| | |||||||||||| | |||||||||| Sbjct 1889 GTGGCGTGATCTAGACCCGAAGCGAAGTGATCTACCCATGGCCAGGTTGAAGNNNNNNNN 1948 Query 240 A-CGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 | ||| | |||||| ||||||| |||||||| |||||| | ||||| Sbjct 1949 AGAGCGCG-TGGAGGCCCGAACCCACTTCAGTTGAAAATGGAGGGGATGAGCTGTGGGTA 2007 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| | |||||| || Sbjct 2008 GGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGT 2043 >seq980 Length=1537 Score = 127 bits (140), Expect = 4e-27 Identities = 136/177 (77%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 159 CGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCAC 218 |||| || || |||||| |||| | | |||||| |||| | |||||||||||| Sbjct 187 CGAGTCTGAAGAGGGCGTTGAGTGGCGTGATCTAGACCCGAAGCGAAGTGATCTACCCAT 128 Query 219 GAGCAGGTTGAAGTCGCG-GTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAG 277 | |||||||||| |||| |||| | | |||||||||||||| ||||||||| Sbjct 127 GGCCAGGTTGAAG-CGCGTGTAAGAGGCGCTGGAGGACCGAACCCACTTCAGTTGAAAAG 69 Query 278 TTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 | |||||| || |||||||||||||||||||||||||||||||| |||||| || Sbjct 68 TGTTCGGACGAGCTGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGCGATAGCTTGT 12 Score = 91.5 bits (100), Expect = 3e-16 Identities = 79/97 (81%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | |||||||||||||||| || || Sbjct 333 AGGGGAGTGAAATAGAACCTGAAACCGTATACTTACAAGCGGTCGGAGCGTTTTGTGGCG 274 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT 107 | ||||||||||||||||| |||||||||||||||| Sbjct 273 G--ACGGCGTGCCTTTTGCAGAATGAGCCTACGAGTT 239 >seq2971 Length=1016 Score = 104 bits (114), Expect = 5e-20 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 ||||| || ||||||||| || || |||||| ||| ||| ||||| ||||||| Sbjct 217 AGCCGTAGCGAAAGCGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCA 276 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 ||||||||||| | |||||||||| || |||| || ||||||||||||| Sbjct 277 GGTGATCTACCCTTGGTCAGGTTGAAGCTGCCGTAAGAGGTAGTGGAGGACCGAACGCAC 336 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 | |||||||||| | ||||| | || |||||| |||| |||||| ||| ||| Sbjct 337 ATCCGTTGAAAAGGGTGGCGATGAGGTGTGGATAGGGGAGAAATTCCAATCGAACCCGGA 396 Query 325 AATAGCTCGT 334 |||||| || Sbjct 397 GATAGCTGGT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972674362880