Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10431 158 2e-36 seq8236 75.2 2e-11 >seq10431 Length=139373 Score = 158 bits (174), Expect = 2e-36 Identities = 184/240 (77%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 92543 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 92600 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 92601 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 92660 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| | || |||| | | ||| | || |||||||||||||| Sbjct 92661 ACCAATGCCTTTCGGCAATGG--ATAGGCCAGCTGATTCTTCCATTGTAGCGCGCGTGCA 92718 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||| | ||||| || |||| | ||||| Sbjct 92719 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT--CGTGCGGCTAAA 92775 Score = 156 bits (172), Expect = 6e-36 Identities = 174/226 (77%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || ||||| |||||||| | ||||||||||||| | Sbjct 63526 GTACAAATGGCAGGGACGTAATCAGCGTGAGCT-GATGACTCACACTTACTAGGAATT-C 63469 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| ||| || |||| |||| ||||||| ||||| | |||||| | || Sbjct 63468 CTCGTTCAAGGGAAATAATTACAATTCCCTATCCCGGTCACGGAAGAGTTTCAACGGTTT 63409 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| | || |||| | | ||| | || |||||||||||||| Sbjct 63408 ACCAATGCCTTTCGGCAATGG--ATAGGCCAGCTGATTCTTCCATTGTAGCGCGCGTGCA 63351 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||| | ||||| || Sbjct 63350 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCAATCT 63306 >seq8236 Length=205915 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| ||| || |||| |||||||| | ||||||||||| ||| Sbjct 73365 GTACAAATGGCAGGGACGTAATCAGCGTGAGC-TGATGACTGACACTTACTAGGAA-TTC 73422 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 | |||| ||| || |||| |||| Sbjct 73423 CCCGTTCAAGGGAAATAATTACAAT 73447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751905914225