Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10431 129 1e-27 >seq10431 Length=139373 Score = 129 bits (142), Expect = 1e-27 Identities = 180/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| ||| | || || |||||| |||| | |||||| Sbjct 95885 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 95826 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| || ||||| | |||||||| ||| |||| ||| | || | ||||| |||| Sbjct 95825 ATAATAAAAGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTGAAATAATGGTTAA 95769 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||||||| | |||| | | ||||||||||||| |||| | Sbjct 95768 GAGGGACAATTCGGGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTGGACCGCAGG 95709 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| ||| |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 95708 GGGACGCCCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 95650 Query 313 TAGGGG 318 || || Sbjct 95649 CAGAGG 95644 Score = 123 bits (136), Expect = 5e-26 Identities = 179/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||| ||||||||||| ||| | || || |||||| |||| | |||||| Sbjct 93423 TTTACTTTGAATAAATTAGAGTGCTCAGAACAAGCGTTTGCTTGAATGGTCGATCATGGA 93364 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||||| | ||||| | |||||||| ||| |||| ||| | || | ||||| |||| Sbjct 93363 ATAATAAAGGAGGAC-TTCGGTTCTA-TTTATTGG-TTCAGGAACTGAAATAATGGTTAA 93307 Query 194 TAGGGA-TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||| | ||||||| | |||| | | ||||||||||||| |||| | Sbjct 93306 GAGGGACAATTCGGGGGCATTCGTATCCCTGCGCGAGAGGTGAAATTCGTGGACCGCAGG 93247 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| ||| |||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 93246 GGGACGCCCTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 93188 Query 313 TAGGGG 318 || || Sbjct 93187 CAGAGG 93182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915081801920