Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq5684 111 2e-22 seq2774 91.5 1e-16 seq473 80.6 3e-13 >seq5684 Length=642 Score = 111 bits (122), Expect = 2e-22 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || | || ||||||||||||||||||||||||||||||| || Sbjct 21 ACGGTGGATGCCTTGGCACTAGAAGCCGAAGAAGGACGTGATAAGCTGCGAAAAGCTTCG 80 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| ||| ||| ||| ||| ||||||| |||||||| ||||| Sbjct 81 GGGAGGAGCAAATATCCTATGAGCCGGAGATATCTGAATGGGGAAACCC 129 >seq2774 Length=1047 Score = 91.5 bits (100), Expect = 1e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||| ||| ||| |||||||||||||||||||||| ||||| Sbjct 801 GGTGGATGCCTTGGCACTAAGAGCCGATGAAAGACGTGATAAGCTGCGAAAAGCCACGGG 860 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 | ||| || ||| ||| ||||||| |||||||| |||||| Sbjct 861 TAGGAGCAAGTATCCTATGAGCCGGAGATATCTGAATGGGGAAACCCG 908 >seq473 Length=1908 Score = 80.6 bits (88), Expect = 3e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||||||| ||| || | || ||||||||||||||| || | ||||| ||| | Sbjct 1900 ACGGTGGATGCCTTGGCACTAGAAGCCGAAGAAGGACGTGACAAACGACGAAATGCTTTG 1841 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||| | | || | |||||| |||| ||||||||||| ||||| Sbjct 1840 GGGAGCTGTAAGTAAGCGCTGATCCAGAGATGTCCGAATGGGGGAACCC 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476740345615