Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3336 336 6e-90 seq5051 260 4e-67 seq12140 150 5e-34 seq6208 127 5e-27 seq2364 82.4 2e-13 >seq3336 Length=967 Score = 336 bits (372), Expect = 6e-90 Identities = 318/401 (79%), Gaps = 10/401 (2%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 389 AAGCGACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCAAGCGTTGTCCG 448 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 |||||| ||||||||||||| ||| |||||||| | |||| | | ||||||| ||| | Sbjct 449 GAATTATTGGGCGTAAAGCGCGCGTAGGCGGTTTTTTAAGTCTGATGTGAAAGCCCACTG 508 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG---GTGG 191 |||||| || ||| || | |||| | ||| ||||| |||| |||| |||| Sbjct 509 CTTAACAGTGGGTCTGCGTTGGAAACTGGAGAACTTGAGTG---CAGAAGGGGAGAGTGG 565 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 ||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||| | Sbjct 566 AATTCCATGTGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAGGCGG 625 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | |||| | ||||||||| | || ||||||||||||||||||||||||||||||| Sbjct 626 CTTTCTGGTCTGTAACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 685 Query 312 CCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGG--ATTTACTTCCTTGG 369 ||||||||||||||||| |||||||| ||||| ||| |||| || || |||| | Sbjct 686 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTGGGGGGTATCGAC-CCCTTAG 744 Query 370 TAAC-GTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | | ||||||||| | ||| ||||||||||| ||| Sbjct 745 TGCCTGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTAC 785 >seq5051 Length=722 Score = 260 bits (288), Expect = 4e-67 Identities = 212/257 (82%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 259 TACCTGACTAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 200 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| |||||||| |||||| | ||| || ||| | | ||| | | ||| Sbjct 199 AAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGCAGAGCAAGTCTGATGT 140 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| || |||||||||| || | |||||||| |||| |||||||| | ||| Sbjct 139 GAAATACCGGGGCTTAACCCCGGGACTGCATTTGAAACTGTTGAGCTAGAGTGGGGAAGA 80 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||| Sbjct 79 GGGAGGTGGAATTCCAGGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 20 Query 243 CGAAGGCAGCCCCCTGG 259 ||||||| || | |||| Sbjct 19 CGAAGGCGGCTCTCTGG 3 >seq12140 Length=4113 Score = 150 bits (166), Expect = 5e-34 Identities = 147/189 (78%), Gaps = 9/189 (5%) Strand=Plus/Plus Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 ||||||||||| |||||||||| || | ||||| | ||||||||| | | |||||| Sbjct 6 GGAGGAACACCGGTGGCGAAGGCGGCTCTCTGGGCTGTTACTGACGCTGAGGAGCGAAAG 65 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAG 346 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 66 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGGGTGCTAG 125 Query 347 TTGTTGGGGATTTAC------TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCT 400 ||||||| || | |||| | |||||||||||| | |||| |||||| Sbjct 126 GTGTTGGGCCCTTTCCACGGTTTCC---GCGCCGTAGCTAACGCATTAAGTGCCCCGCCT 182 Query 401 GGGGAATAC 409 ||||| ||| Sbjct 183 GGGGAGTAC 191 >seq6208 Length=560 Score = 127 bits (140), Expect = 5e-27 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 478 TACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 537 Query 63 AAGCGTTAATCGGAATTACTGGG 85 ||||||||||||||||||||||| Sbjct 538 AAGCGTTAATCGGAATTACTGGG 560 >seq2364 Length=1112 Score = 82.4 bits (90), Expect = 2e-13 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT-TGGGGATTTACT 362 ||||||||||||||||||||||||| |||||||| ||||| ||| |||| ||| Sbjct 1112 ATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAGGTGTCGGGGGGCTTAGC 1053 Query 363 TCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| ||| || ||||||||| | ||| ||||||||||| ||| Sbjct 1052 CCCTCGGTGCCGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTAC 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289433448160