Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2158 197 1e-48 seq473 107 2e-21 seq12140 96.9 4e-18 seq2475 84.2 2e-14 seq1286 82.4 8e-14 >seq2158 Length=1154 Score = 197 bits (218), Expect = 1e-48 Identities = 150/175 (86%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||||||||||||||||| || ||||||||| ||||| ||||| || || ||| || Sbjct 203 CGCAAACGGACACACGTAGTCATGTAGAATATACTGAGGCG-TTGAGAGATTCGCGGCTA 145 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||| ||||||||||||||| ||||||||||||||| |||||| |||| ||| Sbjct 144 AGGAATTAGGCAAACTGACCCCGTAACTTCGGGATAAGGGGTCCT---CCAGTCCGGGGG 88 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||||||||||| |||||||||||||||||||||| |||||||||||| || Sbjct 87 AGGCGCAGAGAATAGGCCCAGGCAACTGTTTAACAAAAATACAGGGCTGTGCAAA 33 >seq473 Length=1908 Score = 107 bits (118), Expect = 2e-21 Identities = 131/176 (74%), Gaps = 7/176 (4%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| |||| | | || || |||||| | ||| ||| || || || Sbjct 345 CGCAAACCGACACAGGTAGATGAGGAGAGAATCCTAAGGTGAGCGAGAGAACTCTCG-TT 287 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| |||||| |||||||||||| || |||| | || | || Sbjct 286 AAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTGACTTA-----GGT 232 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||||||| ||| ||||||||||| ||||||||||| || ||| || Sbjct 231 CAGCCGCAGTGAATAGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAA 176 >seq12140 Length=4113 Score = 96.9 bits (106), Expect = 4e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || || ||| || ||||||||||| | ||| |||||| ||||||| Sbjct 2938 CAAACCGACACAGGTGATCAGGTAGAGAATACTAAGGCGTTCGAGAGAATCATGGTTAAG 2997 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGG 121 ||||| |||||| || ||| |||||||||||| || || Sbjct 2998 GAACTCGGCAAAATGCCCCCGTAACTTCGGGAGAAGGG 3035 >seq2475 Length=1094 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 44 GGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCT 103 ||| || ||||||||||| | ||| |||||| |||||||||||| |||||| || ||| Sbjct 1016 GGTAGAGAATACTAAGGCGTTCGAGAGAATCATGGTTAAGGAACTCGGCAAAATGCCCCC 1075 Query 104 GTAACTTCGGGATAAAGGG 122 |||||||||||| || ||| Sbjct 1076 GTAACTTCGGGAGAAGGGG 1094 >seq1286 Length=1409 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || |||| |||||||||||| ||| ||| ||| Sbjct 174 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 115 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | |||||||||||| || Sbjct 114 GAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531133539410