Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq473 269 7e-70 seq2036 208 2e-51 seq12140 167 6e-39 seq1286 138 3e-30 seq2475 80.6 7e-13 >seq473 Length=1908 Score = 269 bits (298), Expect = 7e-70 Identities = 265/346 (77%), Gaps = 26/346 (8%) Strand=Plus/Plus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 60 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 ||| |||||||||||||||||| |||||||| || ||| |||||| | ||||| ||| Sbjct 61 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGATCTTCGCTTGCGCTAAACCCT 120 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||||||||| |||||||||||||||||| |||||||| || ||| || || || Sbjct 121 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTTACGATTTAGC 180 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 310 |||| ||||||||||| ||||||||| || ||||| | || || | ||| || Sbjct 181 AGAGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCCTATTCACTGCGGC-----TGACCT 235 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 |||| | || | ||||||||||||||||||| | | |||| Sbjct 236 --------AAGT-------------CAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTT 274 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||| |||||||| | |||||||||| | |||| | ||||||| Sbjct 275 GCCGAGTTCCTTAACGAGAGTTCTCTCGCTCACCTTAGGATTCTCT 320 >seq2036 Length=1179 Score = 208 bits (230), Expect = 2e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| | | |||||||| ||||||| || ||||||| Sbjct 1005 CGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGT 1064 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1065 GCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1124 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG 175 ||||||||||||| |||||||||||||||||| |||||||| || ||||||||| Sbjct 1125 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGCTTCG 1179 >seq12140 Length=4113 Score = 167 bits (184), Expect = 6e-39 Identities = 182/241 (76%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || | | ||||||| | |||| ||| ||||||| | | ||||| Sbjct 3367 GCATCTTTACTCGTACTGCAATTTCGCCGAGTTCATGGTTGAGACAGTGGGGAAGTCGTT 3308 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3307 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 3248 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAACCCCA 190 | ||||| ||||||||||| ||||||| || |||||| || || || Sbjct 3247 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCCGCTTCGACTTGCGTCTGACAGGT 3188 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||||||||| |||||||||||| |||| || ||||| || ||| || || || Sbjct 3187 CCTCTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCGTCTTGCGACTTCGC 3128 Query 251 A 251 | Sbjct 3127 A 3127 Score = 80.6 bits (88), Expect = 7e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| |||||||| || ||||||| | || Sbjct 3034 CCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATGATTCTCTCGAACG 2975 Query 403 CCTTGGTATTCTCTACC 419 |||| |||||||||||| Sbjct 2974 CCTTAGTATTCTCTACC 2958 >seq1286 Length=1409 Score = 138 bits (152), Expect = 3e-30 Identities = 131/164 (80%), Gaps = 9/164 (5%) Strand=Plus/Plus Query 269 TAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT---TACG-GAGCAAGTCC 324 |||||||| ||||| |||||||||||||| | | |||| | || ||| | | Sbjct 1 TAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCATCCGCGAGGGA---C 57 Query 325 TTCACCCTCAC--CGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTT 382 |||||| || | ||| ||||||||||||||||||| || |||||||||||||||| Sbjct 58 TTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCTAGTTCCTT 117 Query 383 CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | ||||||||||||||||||||||||||||||||||| ||||| Sbjct 118 CACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCAC 161 >seq2475 Length=1094 Score = 80.6 bits (88), Expect = 7e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| |||||||| || ||||||| | || Sbjct 1092 CCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATGATTCTCTCGAACG 1033 Query 403 CCTTGGTATTCTCTACC 419 |||| |||||||||||| Sbjct 1032 CCTTAGTATTCTCTACC 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260637167680