Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq229 104 1e-20 seq2774 80.6 1e-13 >seq229 Length=2155 Score = 104 bits (114), Expect = 1e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| Sbjct 425 GGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 366 Query 61 CCGAATCCCCGC 72 | ||||||| || Sbjct 365 CTGAATCCCTGC 354 >seq2774 Length=1047 Score = 80.6 bits (88), Expect = 1e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCA 57 |||| |||||||||| |||||||||||||||||||||||||||| |||| |||||| Sbjct 991 GGAAGAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACGGGGAGAAGCCCA 1047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230372103600